miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25049 5' -60.3 NC_005336.1 + 68827 0.66 0.721063
Target:  5'- uGCGUgugcgGCAUCgaCCCGuACccgcGCGGCGGCc -3'
miRNA:   3'- -UGCG-----UGUAGa-GGGC-UGa---CGCCGCCGa -5'
25049 5' -60.3 NC_005336.1 + 21636 0.66 0.721063
Target:  5'- cGCGCcgucaaGCGcCUCgCCGuGCUGCGGCuGCUg -3'
miRNA:   3'- -UGCG------UGUaGAG-GGC-UGACGCCGcCGA- -5'
25049 5' -60.3 NC_005336.1 + 48915 0.66 0.721063
Target:  5'- cACGCAguUUUUCCagauGCUGCGGCuGGUg -3'
miRNA:   3'- -UGCGUguAGAGGGc---UGACGCCG-CCGa -5'
25049 5' -60.3 NC_005336.1 + 104797 0.66 0.720091
Target:  5'- gGCGCGCGUCUUcuUCGGgccgcuguacuacCUGCGucuGCGGCa -3'
miRNA:   3'- -UGCGUGUAGAG--GGCU-------------GACGC---CGCCGa -5'
25049 5' -60.3 NC_005336.1 + 3497 0.66 0.711305
Target:  5'- cCGCGaaggCggCCGGCaGCGGCGGCg -3'
miRNA:   3'- uGCGUgua-GagGGCUGaCGCCGCCGa -5'
25049 5' -60.3 NC_005336.1 + 68418 0.66 0.711305
Target:  5'- cCGCGC-UCgcgccCCCG-CUGCGggcGCGGCUa -3'
miRNA:   3'- uGCGUGuAGa----GGGCuGACGC---CGCCGA- -5'
25049 5' -60.3 NC_005336.1 + 3497 0.66 0.711305
Target:  5'- cCGCGaaggCggCCGGCaGCGGCGGCg -3'
miRNA:   3'- uGCGUgua-GagGGCUGaCGCCGCCGa -5'
25049 5' -60.3 NC_005336.1 + 58965 0.66 0.705417
Target:  5'- cGCGCGCAUCaagagcgcggugcggUCCUGGCgcccgcugGUGGaGGCUa -3'
miRNA:   3'- -UGCGUGUAG---------------AGGGCUGa-------CGCCgCCGA- -5'
25049 5' -60.3 NC_005336.1 + 65014 0.66 0.702466
Target:  5'- gACGCGCcAagUCUCGACUGCaugcucgccgcacucGCGGCUa -3'
miRNA:   3'- -UGCGUG-UagAGGGCUGACGc--------------CGCCGA- -5'
25049 5' -60.3 NC_005336.1 + 3867 0.66 0.701481
Target:  5'- cGCGCGCGUCgcgCgCCGAg-GCcGCGGCc -3'
miRNA:   3'- -UGCGUGUAGa--G-GGCUgaCGcCGCCGa -5'
25049 5' -60.3 NC_005336.1 + 74111 0.66 0.701481
Target:  5'- uGCGCACcggcaUCUCGGC--CGGCGGCa -3'
miRNA:   3'- -UGCGUGuag--AGGGCUGacGCCGCCGa -5'
25049 5' -60.3 NC_005336.1 + 3867 0.66 0.701481
Target:  5'- cGCGCGCGUCgcgCgCCGAg-GCcGCGGCc -3'
miRNA:   3'- -UGCGUGUAGa--G-GGCUgaCGcCGCCGa -5'
25049 5' -60.3 NC_005336.1 + 22639 0.66 0.692591
Target:  5'- cGCGCGCAagaacccagccugcgUUCCCGGCgucgUGCGcGCGGUc -3'
miRNA:   3'- -UGCGUGUa--------------GAGGGCUG----ACGC-CGCCGa -5'
25049 5' -60.3 NC_005336.1 + 49895 0.66 0.691601
Target:  5'- aGCGCACuUCggagUCCCGAUcGCGGacgaGGUg -3'
miRNA:   3'- -UGCGUGuAG----AGGGCUGaCGCCg---CCGa -5'
25049 5' -60.3 NC_005336.1 + 139676 0.66 0.691601
Target:  5'- -aGCGagGUCUCgCGGCUGCGG-GGUg -3'
miRNA:   3'- ugCGUg-UAGAGgGCUGACGCCgCCGa -5'
25049 5' -60.3 NC_005336.1 + 35115 0.66 0.691601
Target:  5'- gGCGCuGCAUCUUCCuGCUGaggaGcGCGGUUa -3'
miRNA:   3'- -UGCG-UGUAGAGGGcUGACg---C-CGCCGA- -5'
25049 5' -60.3 NC_005336.1 + 71996 0.66 0.691601
Target:  5'- cGCGUGCAUCgUUUCGACcgaGCGcuGCGGCUg -3'
miRNA:   3'- -UGCGUGUAG-AGGGCUGa--CGC--CGCCGA- -5'
25049 5' -60.3 NC_005336.1 + 65523 0.66 0.691601
Target:  5'- gACGCGCGUgCUCCCGAgCcGaCGGuuGCUc -3'
miRNA:   3'- -UGCGUGUA-GAGGGCU-GaC-GCCgcCGA- -5'
25049 5' -60.3 NC_005336.1 + 139676 0.66 0.691601
Target:  5'- -aGCGagGUCUCgCGGCUGCGG-GGUg -3'
miRNA:   3'- ugCGUg-UAGAGgGCUGACGCCgCCGa -5'
25049 5' -60.3 NC_005336.1 + 56405 0.66 0.688627
Target:  5'- cCGUACGcguUC-CCCGACUccgcggacccagagGCGcGCGGCUa -3'
miRNA:   3'- uGCGUGU---AGaGGGCUGA--------------CGC-CGCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.