miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25049 5' -60.3 NC_005336.1 + 125109 1.07 0.001312
Target:  5'- gACGCACAUCUCCCGACUGCGGCGGCUg -3'
miRNA:   3'- -UGCGUGUAGAGGGCUGACGCCGCCGA- -5'
25049 5' -60.3 NC_005336.1 + 44473 0.78 0.140829
Target:  5'- cGCGCACAUgaUCgCCGACUGCGGCaaGGCc -3'
miRNA:   3'- -UGCGUGUAg-AG-GGCUGACGCCG--CCGa -5'
25049 5' -60.3 NC_005336.1 + 109943 0.78 0.148118
Target:  5'- -aGCAgCAUCUCgCGgaGCUGCGGCGGCUu -3'
miRNA:   3'- ugCGU-GUAGAGgGC--UGACGCCGCCGA- -5'
25049 5' -60.3 NC_005336.1 + 40607 0.78 0.159695
Target:  5'- gGCGCGcCGUCgUUgUGGCUGCGGCGGCg -3'
miRNA:   3'- -UGCGU-GUAG-AGgGCUGACGCCGCCGa -5'
25049 5' -60.3 NC_005336.1 + 89515 0.77 0.172082
Target:  5'- cGCGCaggGCAUCgcggCCGACgGCGGCGGCUg -3'
miRNA:   3'- -UGCG---UGUAGag--GGCUGaCGCCGCCGA- -5'
25049 5' -60.3 NC_005336.1 + 129422 0.76 0.209381
Target:  5'- cGCGCGCGUggacCUCCCGGagacCUGCuGCGGCUg -3'
miRNA:   3'- -UGCGUGUA----GAGGGCU----GACGcCGCCGA- -5'
25049 5' -60.3 NC_005336.1 + 92393 0.76 0.214506
Target:  5'- uGCGCGCGUCgucgCCgacgcccagCGGCUGCGGCGGg- -3'
miRNA:   3'- -UGCGUGUAGa---GG---------GCUGACGCCGCCga -5'
25049 5' -60.3 NC_005336.1 + 13613 0.73 0.291296
Target:  5'- uCGCcguCGUgCUCCaugGGCUGCGGCGGCg -3'
miRNA:   3'- uGCGu--GUA-GAGGg--CUGACGCCGCCGa -5'
25049 5' -60.3 NC_005336.1 + 122428 0.73 0.298018
Target:  5'- aGCGCACGUggacuaccCUCCCGAgU-CGGCGGUUg -3'
miRNA:   3'- -UGCGUGUA--------GAGGGCUgAcGCCGCCGA- -5'
25049 5' -60.3 NC_005336.1 + 117467 0.73 0.318903
Target:  5'- cACGCGCAgCgaaagCCCGcGCUcgGCGGCGGCg -3'
miRNA:   3'- -UGCGUGUaGa----GGGC-UGA--CGCCGCCGa -5'
25049 5' -60.3 NC_005336.1 + 133330 0.73 0.321769
Target:  5'- gGCGCGCGgguccgcggacucgaUCUCgCCGGaggcgGCGGCGGCg -3'
miRNA:   3'- -UGCGUGU---------------AGAG-GGCUga---CGCCGCCGa -5'
25049 5' -60.3 NC_005336.1 + 130187 0.73 0.326105
Target:  5'- cGCGCGCAUCUUCCccucCUGCgacauGGCGGCc -3'
miRNA:   3'- -UGCGUGUAGAGGGcu--GACG-----CCGCCGa -5'
25049 5' -60.3 NC_005336.1 + 29015 0.72 0.333426
Target:  5'- uCGCACccgcagCCCGGCggcaGCGGCGGCUu -3'
miRNA:   3'- uGCGUGuaga--GGGCUGa---CGCCGCCGA- -5'
25049 5' -60.3 NC_005336.1 + 65223 0.72 0.340868
Target:  5'- cACGCACGccagcggcgacUCUCCgGACaGCGGCGcGCc -3'
miRNA:   3'- -UGCGUGU-----------AGAGGgCUGaCGCCGC-CGa -5'
25049 5' -60.3 NC_005336.1 + 34867 0.72 0.347667
Target:  5'- cGCGCucCAUCUCgCCGAuCUugaugccgccgccGCGGCGGCg -3'
miRNA:   3'- -UGCGu-GUAGAG-GGCU-GA-------------CGCCGCCGa -5'
25049 5' -60.3 NC_005336.1 + 134131 0.72 0.348429
Target:  5'- gACGCugGcggcgCUCCCGGCcGCGGacaGGCUc -3'
miRNA:   3'- -UGCGugUa----GAGGGCUGaCGCCg--CCGA- -5'
25049 5' -60.3 NC_005336.1 + 15791 0.72 0.356109
Target:  5'- uGCGCAUgAUCaugCCCGAgaGCGGCGuGCg -3'
miRNA:   3'- -UGCGUG-UAGa--GGGCUgaCGCCGC-CGa -5'
25049 5' -60.3 NC_005336.1 + 29367 0.72 0.363907
Target:  5'- cACGCGCAUCgCgCaGAUaUGCGGCGGCg -3'
miRNA:   3'- -UGCGUGUAGaGgG-CUG-ACGCCGCCGa -5'
25049 5' -60.3 NC_005336.1 + 3655 0.71 0.408018
Target:  5'- uGCGCGCcgCggcgggagggaggggUCUCGACUGCGgGCGGUc -3'
miRNA:   3'- -UGCGUGuaG---------------AGGGCUGACGC-CGCCGa -5'
25049 5' -60.3 NC_005336.1 + 3655 0.71 0.408018
Target:  5'- uGCGCGCcgCggcgggagggaggggUCUCGACUGCGgGCGGUc -3'
miRNA:   3'- -UGCGUGuaG---------------AGGGCUGACGC-CGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.