miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25050 3' -56.6 NC_005336.1 + 129834 0.66 0.892766
Target:  5'- uCGUGCGCAUgcugcucGACGGGggcgcggacacacaCGCuGUCGACa -3'
miRNA:   3'- -GCACGCGUA-------CUGUCCg-------------GCG-UAGCUGc -5'
25050 3' -56.6 NC_005336.1 + 17264 0.66 0.890763
Target:  5'- --cGCGCGcGcGCGGGUCGCGUCcACGc -3'
miRNA:   3'- gcaCGCGUaC-UGUCCGGCGUAGcUGC- -5'
25050 3' -56.6 NC_005336.1 + 80957 0.66 0.890763
Target:  5'- gGUGCGCGcagcgcGCAGGCUGCGcagGGCGc -3'
miRNA:   3'- gCACGCGUac----UGUCCGGCGUag-CUGC- -5'
25050 3' -56.6 NC_005336.1 + 58154 0.66 0.890763
Target:  5'- -cUGCGCGgcGACGGcGCgGCcgCGAUGg -3'
miRNA:   3'- gcACGCGUa-CUGUC-CGgCGuaGCUGC- -5'
25050 3' -56.6 NC_005336.1 + 73892 0.66 0.890763
Target:  5'- --cGCGCucgcccACGGGCCGCA-CGGCc -3'
miRNA:   3'- gcaCGCGuac---UGUCCGGCGUaGCUGc -5'
25050 3' -56.6 NC_005336.1 + 37655 0.66 0.890763
Target:  5'- uCG-GUGUccGGCGGcGCgGCGUCGAUGa -3'
miRNA:   3'- -GCaCGCGuaCUGUC-CGgCGUAGCUGC- -5'
25050 3' -56.6 NC_005336.1 + 8851 0.66 0.890763
Target:  5'- gCGUGUGCAaGuACAGG-UGCAgCGGCGu -3'
miRNA:   3'- -GCACGCGUaC-UGUCCgGCGUaGCUGC- -5'
25050 3' -56.6 NC_005336.1 + 131100 0.66 0.890091
Target:  5'- cCG-GCuGCAUGccgcugcGgAGGCCGCG-CGACGg -3'
miRNA:   3'- -GCaCG-CGUAC-------UgUCCGGCGUaGCUGC- -5'
25050 3' -56.6 NC_005336.1 + 9537 0.66 0.88394
Target:  5'- aGUGCaCcgGGCAGGCggCGCAgccgcgcgCGGCGu -3'
miRNA:   3'- gCACGcGuaCUGUCCG--GCGUa-------GCUGC- -5'
25050 3' -56.6 NC_005336.1 + 31153 0.66 0.88394
Target:  5'- cCGUGCaGCcgucgcUGcGCAGGCCGcCAUCGcGCGc -3'
miRNA:   3'- -GCACG-CGu-----AC-UGUCCGGC-GUAGC-UGC- -5'
25050 3' -56.6 NC_005336.1 + 39692 0.66 0.88394
Target:  5'- aCGUGCGCGgcgGGCGccucgccGCCGCGcUgGACGc -3'
miRNA:   3'- -GCACGCGUa--CUGUc------CGGCGU-AgCUGC- -5'
25050 3' -56.6 NC_005336.1 + 90070 0.66 0.88394
Target:  5'- aCGUaGCGCGUcuuCAGcGCgGCGUUGAUGg -3'
miRNA:   3'- -GCA-CGCGUAcu-GUC-CGgCGUAGCUGC- -5'
25050 3' -56.6 NC_005336.1 + 108636 0.66 0.88394
Target:  5'- --cGCGCgAUGGC-GGCCuGCGcagCGACGg -3'
miRNA:   3'- gcaCGCG-UACUGuCCGG-CGUa--GCUGC- -5'
25050 3' -56.6 NC_005336.1 + 113391 0.66 0.88394
Target:  5'- uGUGcCGCGUGcuGCAcaaaCGCGUCGACGa -3'
miRNA:   3'- gCAC-GCGUAC--UGUccg-GCGUAGCUGC- -5'
25050 3' -56.6 NC_005336.1 + 116439 0.66 0.88394
Target:  5'- cCGUGCGCc--GCAGGuaCCGCGcgagcUCGAUGu -3'
miRNA:   3'- -GCACGCGuacUGUCC--GGCGU-----AGCUGC- -5'
25050 3' -56.6 NC_005336.1 + 49357 0.66 0.883245
Target:  5'- gCGcGCGCGUGACcagcuccGGcGCCGCGaaGACa -3'
miRNA:   3'- -GCaCGCGUACUG-------UC-CGGCGUagCUGc -5'
25050 3' -56.6 NC_005336.1 + 13086 0.66 0.881849
Target:  5'- gCG-GUGCA-GGCGGcGCCGCGUgccgugcacgcgcgCGACGg -3'
miRNA:   3'- -GCaCGCGUaCUGUC-CGGCGUA--------------GCUGC- -5'
25050 3' -56.6 NC_005336.1 + 128255 0.66 0.876895
Target:  5'- --cGCGCGgcGCuGGCCGCGcgCGugGa -3'
miRNA:   3'- gcaCGCGUacUGuCCGGCGUa-GCugC- -5'
25050 3' -56.6 NC_005336.1 + 64900 0.66 0.876895
Target:  5'- --cGCGCuUGGCgAGGCUGUugcgCGACGc -3'
miRNA:   3'- gcaCGCGuACUG-UCCGGCGua--GCUGC- -5'
25050 3' -56.6 NC_005336.1 + 101642 0.66 0.876895
Target:  5'- gGUGCGCuccaccGAggaGGGCCGCGagugCGugGa -3'
miRNA:   3'- gCACGCGua----CUg--UCCGGCGUa---GCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.