miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25050 3' -56.6 NC_005336.1 + 72311 0.69 0.713578
Target:  5'- gCGUGCGCGUGAUccgcgaggugcucaaGGGgCGCAUCu--- -3'
miRNA:   3'- -GCACGCGUACUG---------------UCCgGCGUAGcugc -5'
25050 3' -56.6 NC_005336.1 + 29426 0.71 0.608164
Target:  5'- cCGcGCGCGUG-CAGG-CGCAUgGACGc -3'
miRNA:   3'- -GCaCGCGUACuGUCCgGCGUAgCUGC- -5'
25050 3' -56.6 NC_005336.1 + 79022 0.71 0.618358
Target:  5'- --cGCGCAUGcccACGGGCaCGuCGUCGAUGc -3'
miRNA:   3'- gcaCGCGUAC---UGUCCG-GC-GUAGCUGC- -5'
25050 3' -56.6 NC_005336.1 + 76319 0.71 0.638767
Target:  5'- cCGUGCGC---GCGGGCCGC--UGGCGc -3'
miRNA:   3'- -GCACGCGuacUGUCCGGCGuaGCUGC- -5'
25050 3' -56.6 NC_005336.1 + 42405 0.7 0.659155
Target:  5'- gCGUGCGCGUGu---GCCGCGccaaCGACGa -3'
miRNA:   3'- -GCACGCGUACugucCGGCGUa---GCUGC- -5'
25050 3' -56.6 NC_005336.1 + 88435 0.7 0.679458
Target:  5'- gGUGCccgaCAUGGCcgccgAGGCCGaCAUCGACc -3'
miRNA:   3'- gCACGc---GUACUG-----UCCGGC-GUAGCUGc -5'
25050 3' -56.6 NC_005336.1 + 66049 0.7 0.679458
Target:  5'- --aGCGCGUgGACGGGCC-CuucUCGGCGa -3'
miRNA:   3'- gcaCGCGUA-CUGUCCGGcGu--AGCUGC- -5'
25050 3' -56.6 NC_005336.1 + 25394 0.69 0.709598
Target:  5'- cCGUGCGCucgccGGCcaccGCCGCGUCGAUc -3'
miRNA:   3'- -GCACGCGua---CUGuc--CGGCGUAGCUGc -5'
25050 3' -56.6 NC_005336.1 + 36250 0.69 0.709598
Target:  5'- --cGCGCGgcGgAGGCCGCGcUCGGCGc -3'
miRNA:   3'- gcaCGCGUacUgUCCGGCGU-AGCUGC- -5'
25050 3' -56.6 NC_005336.1 + 75970 0.71 0.597989
Target:  5'- -uUGCGCuccAUGGC-GGCCGCG-CGGCGg -3'
miRNA:   3'- gcACGCG---UACUGuCCGGCGUaGCUGC- -5'
25050 3' -56.6 NC_005336.1 + 64191 0.71 0.597989
Target:  5'- --gGCGCGccaGACAGGCUGCuguUCGACc -3'
miRNA:   3'- gcaCGCGUa--CUGUCCGGCGu--AGCUGc -5'
25050 3' -56.6 NC_005336.1 + 36544 0.71 0.587839
Target:  5'- uCGUGCGCGccgcugGGCGuGaGCCGCGUCG-CGg -3'
miRNA:   3'- -GCACGCGUa-----CUGU-C-CGGCGUAGCuGC- -5'
25050 3' -56.6 NC_005336.1 + 13028 0.74 0.432795
Target:  5'- --cGCGCcggGACAGGCCGCGUuuaugcauccuucCGGCGa -3'
miRNA:   3'- gcaCGCGua-CUGUCCGGCGUA-------------GCUGC- -5'
25050 3' -56.6 NC_005336.1 + 52049 0.74 0.441771
Target:  5'- gCGUGUGCGcGACGGGCCcGCGcgcgccuUCGugGa -3'
miRNA:   3'- -GCACGCGUaCUGUCCGG-CGU-------AGCugC- -5'
25050 3' -56.6 NC_005336.1 + 64570 0.74 0.451766
Target:  5'- gCGcUGCGCGUGGC-GGCgCGCGUCguaGACGg -3'
miRNA:   3'- -GC-ACGCGUACUGuCCG-GCGUAG---CUGC- -5'
25050 3' -56.6 NC_005336.1 + 64138 0.74 0.45819
Target:  5'- cCGUGCGCGaggGGCAGcggcucuucgcggcGCUGCGUCGGCu -3'
miRNA:   3'- -GCACGCGUa--CUGUC--------------CGGCGUAGCUGc -5'
25050 3' -56.6 NC_005336.1 + 15013 0.74 0.470248
Target:  5'- --cGCGCGgcgcGCGGGCgGCGUCGGCGc -3'
miRNA:   3'- gcaCGCGUac--UGUCCGgCGUAGCUGC- -5'
25050 3' -56.6 NC_005336.1 + 54181 0.72 0.527833
Target:  5'- cCGgGCGCGgucGGCGGcGCCGCG-CGACGg -3'
miRNA:   3'- -GCaCGCGUa--CUGUC-CGGCGUaGCUGC- -5'
25050 3' -56.6 NC_005336.1 + 110105 0.72 0.557606
Target:  5'- aCGUGCGCGUGgaACAcGuGCCGCGagGGCa -3'
miRNA:   3'- -GCACGCGUAC--UGU-C-CGGCGUagCUGc -5'
25050 3' -56.6 NC_005336.1 + 125488 0.72 0.567641
Target:  5'- gGUGCGCGUGcguGCGGuCCGCAgCGGCa -3'
miRNA:   3'- gCACGCGUAC---UGUCcGGCGUaGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.