miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25050 5' -58 NC_005336.1 + 7275 0.66 0.831973
Target:  5'- uGUCGGCGucuucGCAgUUGGGcGUCUUGCg -3'
miRNA:   3'- -UAGCCGCucc--UGUgGACCC-UAGAGCG- -5'
25050 5' -58 NC_005336.1 + 116689 0.66 0.831973
Target:  5'- cUCGuacGCGGGGcagGCGCCgccGGGGUC-CGCc -3'
miRNA:   3'- uAGC---CGCUCC---UGUGGa--CCCUAGaGCG- -5'
25050 5' -58 NC_005336.1 + 121349 0.66 0.831973
Target:  5'- -gCGGCGAGGGaguCGCUUGGcuGUCUgGUg -3'
miRNA:   3'- uaGCCGCUCCU---GUGGACCc-UAGAgCG- -5'
25050 5' -58 NC_005336.1 + 120594 0.66 0.831145
Target:  5'- -gCGGCGAcgccggcGGACGCCgucGaGAUgCUCGCg -3'
miRNA:   3'- uaGCCGCU-------CCUGUGGac-C-CUA-GAGCG- -5'
25050 5' -58 NC_005336.1 + 110634 0.66 0.822764
Target:  5'- --gGGCGcgagcaccauuuaGGGGCGCCUGcGGGUUuaauugUCGCu -3'
miRNA:   3'- uagCCGC-------------UCCUGUGGAC-CCUAG------AGCG- -5'
25050 5' -58 NC_005336.1 + 96618 0.66 0.820217
Target:  5'- -aCGGCGGGGAagcgcucguCGCCgccaggcucgugcGGGGUCagCGCg -3'
miRNA:   3'- uaGCCGCUCCU---------GUGGa------------CCCUAGa-GCG- -5'
25050 5' -58 NC_005336.1 + 118166 0.66 0.81851
Target:  5'- -aCGGCGAGG-CGCUUGacggcgcggaacucGGUCUUGCg -3'
miRNA:   3'- uaGCCGCUCCuGUGGACc-------------CUAGAGCG- -5'
25050 5' -58 NC_005336.1 + 44138 0.66 0.815076
Target:  5'- -gCGGCGcuGGACACCUacGcGGcgCUCuGCg -3'
miRNA:   3'- uaGCCGCu-CCUGUGGA--C-CCuaGAG-CG- -5'
25050 5' -58 NC_005336.1 + 108819 0.66 0.815076
Target:  5'- -cCGGCu-GGugACCUGGGGcgCgccgUCGCa -3'
miRNA:   3'- uaGCCGcuCCugUGGACCCUa-G----AGCG- -5'
25050 5' -58 NC_005336.1 + 47537 0.66 0.806379
Target:  5'- -gCGGCG-GGu--UC-GGGAUCUCGCa -3'
miRNA:   3'- uaGCCGCuCCuguGGaCCCUAGAGCG- -5'
25050 5' -58 NC_005336.1 + 124753 0.66 0.806379
Target:  5'- cGUCGGCGAGGGcCGCgaGGug-CcCGCg -3'
miRNA:   3'- -UAGCCGCUCCU-GUGgaCCcuaGaGCG- -5'
25050 5' -58 NC_005336.1 + 29525 0.66 0.8055
Target:  5'- cGUCGGCGAGGccgugcuggccguGgACCUGGacccggccguGGcCUCGCu -3'
miRNA:   3'- -UAGCCGCUCC-------------UgUGGACC----------CUaGAGCG- -5'
25050 5' -58 NC_005336.1 + 10163 0.66 0.797526
Target:  5'- cGUCGuGCGAGaGCACCUcGGuGUCggggCGCg -3'
miRNA:   3'- -UAGC-CGCUCcUGUGGA-CCcUAGa---GCG- -5'
25050 5' -58 NC_005336.1 + 8724 0.66 0.793943
Target:  5'- -gCGGUGGGGACGCaCUGGuuucggccacggccGAagcggccaaacagUCUCGCc -3'
miRNA:   3'- uaGCCGCUCCUGUG-GACC--------------CU-------------AGAGCG- -5'
25050 5' -58 NC_005336.1 + 123757 0.67 0.779387
Target:  5'- -aCGGCgggaGAGGugGCCUGcg--CUCGCa -3'
miRNA:   3'- uaGCCG----CUCCugUGGACccuaGAGCG- -5'
25050 5' -58 NC_005336.1 + 95053 0.67 0.770118
Target:  5'- gGUCGGCGuGGAC-CC-GGGA---CGCa -3'
miRNA:   3'- -UAGCCGCuCCUGuGGaCCCUagaGCG- -5'
25050 5' -58 NC_005336.1 + 99639 0.67 0.760728
Target:  5'- -gCGGCGuGGGGCACCUcGcGGAcgCgcgCGCg -3'
miRNA:   3'- uaGCCGC-UCCUGUGGA-C-CCUa-Ga--GCG- -5'
25050 5' -58 NC_005336.1 + 54406 0.67 0.760728
Target:  5'- -aCGGUGaAGGACccgcGCCUGGGcgcCUCGg -3'
miRNA:   3'- uaGCCGC-UCCUG----UGGACCCua-GAGCg -5'
25050 5' -58 NC_005336.1 + 12661 0.67 0.760728
Target:  5'- -gCGGCGcu-GCGCCggGGGGUgUCGCg -3'
miRNA:   3'- uaGCCGCuccUGUGGa-CCCUAgAGCG- -5'
25050 5' -58 NC_005336.1 + 50208 0.67 0.760728
Target:  5'- -gCGGCGAGGugauacGCGCC-GGGAcgcggCUCGg -3'
miRNA:   3'- uaGCCGCUCC------UGUGGaCCCUa----GAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.