miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25050 5' -58 NC_005336.1 + 5514 0.68 0.712276
Target:  5'- aGUCGGCG---GCcUCUGGGGUCUcCGCa -3'
miRNA:   3'- -UAGCCGCuccUGuGGACCCUAGA-GCG- -5'
25050 5' -58 NC_005336.1 + 7275 0.66 0.831973
Target:  5'- uGUCGGCGucuucGCAgUUGGGcGUCUUGCg -3'
miRNA:   3'- -UAGCCGCucc--UGUgGACCC-UAGAGCG- -5'
25050 5' -58 NC_005336.1 + 8724 0.66 0.793943
Target:  5'- -gCGGUGGGGACGCaCUGGuuucggccacggccGAagcggccaaacagUCUCGCc -3'
miRNA:   3'- uaGCCGCUCCUGUG-GACC--------------CU-------------AGAGCG- -5'
25050 5' -58 NC_005336.1 + 10163 0.66 0.797526
Target:  5'- cGUCGuGCGAGaGCACCUcGGuGUCggggCGCg -3'
miRNA:   3'- -UAGC-CGCUCcUGUGGA-CCcUAGa---GCG- -5'
25050 5' -58 NC_005336.1 + 12661 0.67 0.760728
Target:  5'- -gCGGCGcu-GCGCCggGGGGUgUCGCg -3'
miRNA:   3'- uaGCCGCuccUGUGGa-CCCUAgAGCG- -5'
25050 5' -58 NC_005336.1 + 17058 0.68 0.702348
Target:  5'- -cCGGCGAgcgccagccucaGGACGCC-GGG--CUCGCa -3'
miRNA:   3'- uaGCCGCU------------CCUGUGGaCCCuaGAGCG- -5'
25050 5' -58 NC_005336.1 + 18677 0.7 0.571039
Target:  5'- -gCGGUucAGcGACGCCgagcugucgGGGAUCUCGCg -3'
miRNA:   3'- uaGCCGc-UC-CUGUGGa--------CCCUAGAGCG- -5'
25050 5' -58 NC_005336.1 + 23878 0.7 0.595204
Target:  5'- gGUCGGCGAGGuCACUUccugcggcgucgucgGGGcgCgCGCg -3'
miRNA:   3'- -UAGCCGCUCCuGUGGA---------------CCCuaGaGCG- -5'
25050 5' -58 NC_005336.1 + 29525 0.66 0.8055
Target:  5'- cGUCGGCGAGGccgugcuggccguGgACCUGGacccggccguGGcCUCGCu -3'
miRNA:   3'- -UAGCCGCUCC-------------UgUGGACC----------CUaGAGCG- -5'
25050 5' -58 NC_005336.1 + 41082 0.68 0.722137
Target:  5'- -aCGcGCuGGGGGcCACC-GGGAUCUCuGCg -3'
miRNA:   3'- uaGC-CG-CUCCU-GUGGaCCCUAGAG-CG- -5'
25050 5' -58 NC_005336.1 + 44138 0.66 0.815076
Target:  5'- -gCGGCGcuGGACACCUacGcGGcgCUCuGCg -3'
miRNA:   3'- uaGCCGCu-CCUGUGGA--C-CCuaGAG-CG- -5'
25050 5' -58 NC_005336.1 + 47537 0.66 0.806379
Target:  5'- -gCGGCG-GGu--UC-GGGAUCUCGCa -3'
miRNA:   3'- uaGCCGCuCCuguGGaCCCUAGAGCG- -5'
25050 5' -58 NC_005336.1 + 50208 0.67 0.760728
Target:  5'- -gCGGCGAGGugauacGCGCC-GGGAcgcggCUCGg -3'
miRNA:   3'- uaGCCGCUCC------UGUGGaCCCUa----GAGCg -5'
25050 5' -58 NC_005336.1 + 54406 0.67 0.760728
Target:  5'- -aCGGUGaAGGACccgcGCCUGGGcgcCUCGg -3'
miRNA:   3'- uaGCCGC-UCCUG----UGGACCCua-GAGCg -5'
25050 5' -58 NC_005336.1 + 65699 0.72 0.484181
Target:  5'- cUCGGCGGGGACGCCguccagcagcacUGcGGAgaacacgaacgcggaCUCGCg -3'
miRNA:   3'- uAGCCGCUCCUGUGG------------AC-CCUa--------------GAGCG- -5'
25050 5' -58 NC_005336.1 + 66249 0.69 0.662142
Target:  5'- uUCGGCGAGGGCuccaccuuCCUGGaGuUCaaGCg -3'
miRNA:   3'- uAGCCGCUCCUGu-------GGACC-CuAGagCG- -5'
25050 5' -58 NC_005336.1 + 83138 0.71 0.521576
Target:  5'- cUUGGUGGuGGAC-CCcGGGAUCUuCGCg -3'
miRNA:   3'- uAGCCGCU-CCUGuGGaCCCUAGA-GCG- -5'
25050 5' -58 NC_005336.1 + 93223 0.69 0.617491
Target:  5'- gAUCGGCGAGGACugCgagcacaUCGCa -3'
miRNA:   3'- -UAGCCGCUCCUGugGacccuagAGCG- -5'
25050 5' -58 NC_005336.1 + 95053 0.67 0.770118
Target:  5'- gGUCGGCGuGGAC-CC-GGGA---CGCa -3'
miRNA:   3'- -UAGCCGCuCCUGuGGaCCCUagaGCG- -5'
25050 5' -58 NC_005336.1 + 96618 0.66 0.820217
Target:  5'- -aCGGCGGGGAagcgcucguCGCCgccaggcucgugcGGGGUCagCGCg -3'
miRNA:   3'- uaGCCGCUCCU---------GUGGa------------CCCUAGa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.