miRNA display CGI


Results 1 - 20 of 432 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25051 3' -60.6 NC_005336.1 + 45149 0.66 0.739827
Target:  5'- -aGUGCugauauGCGGCGUGcUGCUGCUgacggCCg -3'
miRNA:   3'- ggCGCG------CGCCGCGCuACGACGAga---GG- -5'
25051 3' -60.6 NC_005336.1 + 132016 0.66 0.739827
Target:  5'- gUCGCcgacUGCGaGCGCGAagucgcGCUGCUUUCUc -3'
miRNA:   3'- -GGCGc---GCGC-CGCGCUa-----CGACGAGAGG- -5'
25051 3' -60.6 NC_005336.1 + 55057 0.66 0.739827
Target:  5'- aCGCGCGCGGUgacGCGuugacgcacGUUGgUgUCCg -3'
miRNA:   3'- gGCGCGCGCCG---CGCua-------CGACgAgAGG- -5'
25051 3' -60.6 NC_005336.1 + 59433 0.66 0.739827
Target:  5'- uCCGCGgaGCGGC-UGgcGCUGCgcgCCg -3'
miRNA:   3'- -GGCGCg-CGCCGcGCuaCGACGagaGG- -5'
25051 3' -60.6 NC_005336.1 + 111416 0.66 0.739827
Target:  5'- gCCGacgaGCGCcauccugaagGGCGCcucGAUGagGCUCUCCc -3'
miRNA:   3'- -GGCg---CGCG----------CCGCG---CUACgaCGAGAGG- -5'
25051 3' -60.6 NC_005336.1 + 97259 0.66 0.739827
Target:  5'- gCCGCGCgGUGGUGUGcGUGCccaaccgcaUGCUagugCCg -3'
miRNA:   3'- -GGCGCG-CGCCGCGC-UACG---------ACGAga--GG- -5'
25051 3' -60.6 NC_005336.1 + 112575 0.66 0.739827
Target:  5'- cCCGCGCuGCuGCGCGAccUGgggagcaaCUGCU-UCCa -3'
miRNA:   3'- -GGCGCG-CGcCGCGCU--AC--------GACGAgAGG- -5'
25051 3' -60.6 NC_005336.1 + 129529 0.66 0.739827
Target:  5'- gCCGCGUugaggacuGCGGcCGCGccgaGCUcGC-CUCCg -3'
miRNA:   3'- -GGCGCG--------CGCC-GCGCua--CGA-CGaGAGG- -5'
25051 3' -60.6 NC_005336.1 + 27685 0.66 0.739827
Target:  5'- gCCGCGCcauGUGG-GCGGugaucuucaucgUGCUGCggcgCUUCg -3'
miRNA:   3'- -GGCGCG---CGCCgCGCU------------ACGACGa---GAGG- -5'
25051 3' -60.6 NC_005336.1 + 67289 0.66 0.739827
Target:  5'- aUCGUGCGCcGCGCGGacaucGUcaaGCUCUUCg -3'
miRNA:   3'- -GGCGCGCGcCGCGCUa----CGa--CGAGAGG- -5'
25051 3' -60.6 NC_005336.1 + 20950 0.66 0.739827
Target:  5'- aUGUGCGUGucaGCGCGGgcuguggGCUGCggcugCUUCa -3'
miRNA:   3'- gGCGCGCGC---CGCGCUa------CGACGa----GAGG- -5'
25051 3' -60.6 NC_005336.1 + 72311 0.66 0.739827
Target:  5'- gCGUGCGCGugaucCGCGAggUGCUcaaggggcGCaUCUCCu -3'
miRNA:   3'- gGCGCGCGCc----GCGCU--ACGA--------CG-AGAGG- -5'
25051 3' -60.6 NC_005336.1 + 133282 0.66 0.739827
Target:  5'- gCGCGCGCGGUacguguucgaccGCGggGCcgugaucgUGUUC-CCu -3'
miRNA:   3'- gGCGCGCGCCG------------CGCuaCG--------ACGAGaGG- -5'
25051 3' -60.6 NC_005336.1 + 77477 0.66 0.738885
Target:  5'- gCCGCGgGCGGCuacugcagcagcaGCuuGAgcuUGCgcugGCUCUCg -3'
miRNA:   3'- -GGCGCgCGCCG-------------CG--CU---ACGa---CGAGAGg -5'
25051 3' -60.6 NC_005336.1 + 65916 0.66 0.736997
Target:  5'- cCCGUGgGCGaGCGCGugugguccauguucGUGCUGgUCg-- -3'
miRNA:   3'- -GGCGCgCGC-CGCGC--------------UACGACgAGagg -5'
25051 3' -60.6 NC_005336.1 + 115405 0.66 0.736052
Target:  5'- uCCGCGUugGCGcGCGCGAgguacguguacacGCUcaUCUCCu -3'
miRNA:   3'- -GGCGCG--CGC-CGCGCUa------------CGAcgAGAGG- -5'
25051 3' -60.6 NC_005336.1 + 59595 0.66 0.731314
Target:  5'- cUCGuCGCGCuGCGCGAggagcccaagaucgaGCUGCUg-CCg -3'
miRNA:   3'- -GGC-GCGCGcCGCGCUa--------------CGACGAgaGG- -5'
25051 3' -60.6 NC_005336.1 + 98668 0.66 0.730364
Target:  5'- uCCGCGCacacggcaGCGGCGCGcc-CUuCUCgUCCg -3'
miRNA:   3'- -GGCGCG--------CGCCGCGCuacGAcGAG-AGG- -5'
25051 3' -60.6 NC_005336.1 + 82153 0.66 0.730364
Target:  5'- cCCgGCcucCGCGGUGCacGAgaaggGCUGCUCcCCg -3'
miRNA:   3'- -GG-CGc--GCGCCGCG--CUa----CGACGAGaGG- -5'
25051 3' -60.6 NC_005336.1 + 3779 0.66 0.730364
Target:  5'- cCCGcCGCGCGGCcCGcgGCcGCcagCgCCg -3'
miRNA:   3'- -GGC-GCGCGCCGcGCuaCGaCGa--GaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.