miRNA display CGI


Results 1 - 20 of 432 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25051 3' -60.6 NC_005336.1 + 124260 1.13 0.000583
Target:  5'- gCCGCGCGCGGCGCGAUGCUGCUCUCCa -3'
miRNA:   3'- -GGCGCGCGCCGCGCUACGACGAGAGG- -5'
25051 3' -60.6 NC_005336.1 + 99008 0.85 0.050665
Target:  5'- gCCGCGCGCacguacuggacGGuCGCGGUGCUGCcCUCCg -3'
miRNA:   3'- -GGCGCGCG-----------CC-GCGCUACGACGaGAGG- -5'
25051 3' -60.6 NC_005336.1 + 74469 0.84 0.06244
Target:  5'- gCC-CGCGCGGCGCG-UGCUGCUCgcgaCCa -3'
miRNA:   3'- -GGcGCGCGCCGCGCuACGACGAGa---GG- -5'
25051 3' -60.6 NC_005336.1 + 9286 0.82 0.085183
Target:  5'- gCCGCGCGCGGCGCGAga--GCaggCUCCg -3'
miRNA:   3'- -GGCGCGCGCCGCGCUacgaCGa--GAGG- -5'
25051 3' -60.6 NC_005336.1 + 15553 0.8 0.115684
Target:  5'- gCCGCGCGCGGCGCGGgucGC-GUUUUCg -3'
miRNA:   3'- -GGCGCGCGCCGCGCUa--CGaCGAGAGg -5'
25051 3' -60.6 NC_005336.1 + 130254 0.8 0.124772
Target:  5'- gCCGCGCGCGGCuGCGccGCcUGCccggugcacuUCUCCg -3'
miRNA:   3'- -GGCGCGCGCCG-CGCuaCG-ACG----------AGAGG- -5'
25051 3' -60.6 NC_005336.1 + 127093 0.8 0.127946
Target:  5'- aCCcCGaCGCGGUGCGAcUGCUGCUCgCCg -3'
miRNA:   3'- -GGcGC-GCGCCGCGCU-ACGACGAGaGG- -5'
25051 3' -60.6 NC_005336.1 + 130633 0.8 0.127946
Target:  5'- gCGCGCGCuGCGCGAcUGCgUGCUC-CCg -3'
miRNA:   3'- gGCGCGCGcCGCGCU-ACG-ACGAGaGG- -5'
25051 3' -60.6 NC_005336.1 + 32261 0.79 0.139302
Target:  5'- aCCGCGCGgaagccgguguucauCGGCGCGAUGCcgUGCUggucauggacCUCCa -3'
miRNA:   3'- -GGCGCGC---------------GCCGCGCUACG--ACGA----------GAGG- -5'
25051 3' -60.6 NC_005336.1 + 131524 0.79 0.1414
Target:  5'- cCCGCGCGCGaGCGUcAUGCgcgaGCUCaUCCg -3'
miRNA:   3'- -GGCGCGCGC-CGCGcUACGa---CGAG-AGG- -5'
25051 3' -60.6 NC_005336.1 + 126379 0.79 0.144961
Target:  5'- aCGCuGCGCGaGCGCGAUGC-GCUCgaagCCc -3'
miRNA:   3'- gGCG-CGCGC-CGCGCUACGaCGAGa---GG- -5'
25051 3' -60.6 NC_005336.1 + 124291 0.79 0.144961
Target:  5'- gUGCGUGCGGCGCagccgccgccGGUaCUGCUCUCCc -3'
miRNA:   3'- gGCGCGCGCCGCG----------CUAcGACGAGAGG- -5'
25051 3' -60.6 NC_005336.1 + 23912 0.79 0.148603
Target:  5'- gCGCGCGCGGcCGCGG-GCUGCgaggCCg -3'
miRNA:   3'- gGCGCGCGCC-GCGCUaCGACGaga-GG- -5'
25051 3' -60.6 NC_005336.1 + 39267 0.79 0.148603
Target:  5'- uCCGCGCGggcaCGGCGUccagGAUGCcgaaGCUCUCCg -3'
miRNA:   3'- -GGCGCGC----GCCGCG----CUACGa---CGAGAGG- -5'
25051 3' -60.6 NC_005336.1 + 129811 0.78 0.153842
Target:  5'- cUCGCGCGCGGCgacugcagagcucguGCGcAUGCUGCUCg-- -3'
miRNA:   3'- -GGCGCGCGCCG---------------CGC-UACGACGAGagg -5'
25051 3' -60.6 NC_005336.1 + 136477 0.78 0.156138
Target:  5'- uCCGCGCGCaagGGCGCGcUGCUGCUg--- -3'
miRNA:   3'- -GGCGCGCG---CCGCGCuACGACGAgagg -5'
25051 3' -60.6 NC_005336.1 + 96406 0.78 0.156138
Target:  5'- -gGCGCGCGGCGCGGUcGCgcgugGCUUUgCg -3'
miRNA:   3'- ggCGCGCGCCGCGCUA-CGa----CGAGAgG- -5'
25051 3' -60.6 NC_005336.1 + 136477 0.78 0.156138
Target:  5'- uCCGCGCGCaagGGCGCGcUGCUGCUg--- -3'
miRNA:   3'- -GGCGCGCG---CCGCGCuACGACGAgagg -5'
25051 3' -60.6 NC_005336.1 + 125926 0.78 0.157686
Target:  5'- gCGCGgugguCGCGGCGcCGccgugcgacaccgacGUGCUGCUCUCCu -3'
miRNA:   3'- gGCGC-----GCGCCGC-GC---------------UACGACGAGAGG- -5'
25051 3' -60.6 NC_005336.1 + 86918 0.78 0.164017
Target:  5'- uCCGCGgagaacgGCGGCGCGAacgGCUGCagcaUCUCCu -3'
miRNA:   3'- -GGCGCg------CGCCGCGCUa--CGACG----AGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.