miRNA display CGI


Results 1 - 20 of 432 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25051 3' -60.6 NC_005336.1 + 99611 0.74 0.282898
Target:  5'- uCCGCGCGCGGCGaccgGgUGCUaugCCg -3'
miRNA:   3'- -GGCGCGCGCCGCgcuaCgACGAga-GG- -5'
25051 3' -60.6 NC_005336.1 + 97815 0.75 0.245896
Target:  5'- gCCGCgggcgagGCGCGGCGCG-UGCUcguGCUCaCCa -3'
miRNA:   3'- -GGCG-------CGCGCCGCGCuACGA---CGAGaGG- -5'
25051 3' -60.6 NC_005336.1 + 64858 0.75 0.257565
Target:  5'- gCGCGCGCGGCGCGcgcguGUGCcGCaaccgcgagaaagUCUCg -3'
miRNA:   3'- gGCGCGCGCCGCGC-----UACGaCG-------------AGAGg -5'
25051 3' -60.6 NC_005336.1 + 44921 0.75 0.25816
Target:  5'- aCgGCGCGC-GCGUGGUcCUGCUCUCa -3'
miRNA:   3'- -GgCGCGCGcCGCGCUAcGACGAGAGg -5'
25051 3' -60.6 NC_005336.1 + 67824 0.75 0.25816
Target:  5'- aCGCGCGCgGGCGCGccGCgguggucGCgCUCCa -3'
miRNA:   3'- gGCGCGCG-CCGCGCuaCGa------CGaGAGG- -5'
25051 3' -60.6 NC_005336.1 + 60031 0.75 0.264174
Target:  5'- -gGUGUGCcGCGCGgcGCUGCaUCUCCu -3'
miRNA:   3'- ggCGCGCGcCGCGCuaCGACG-AGAGG- -5'
25051 3' -60.6 NC_005336.1 + 97304 0.75 0.266612
Target:  5'- -gGCGCGCGGCcgugGCGGaGCUGCgggugccuuuugcagUCUCCu -3'
miRNA:   3'- ggCGCGCGCCG----CGCUaCGACG---------------AGAGG- -5'
25051 3' -60.6 NC_005336.1 + 46273 0.74 0.276543
Target:  5'- uCUGCGCGCGGCGC--UGCgGCgagCUgCCg -3'
miRNA:   3'- -GGCGCGCGCCGCGcuACGaCGa--GA-GG- -5'
25051 3' -60.6 NC_005336.1 + 95538 0.74 0.282898
Target:  5'- uCCG-GCGCGGCGCGGUGC-GCgUCgcaguagcgCCg -3'
miRNA:   3'- -GGCgCGCGCCGCGCUACGaCG-AGa--------GG- -5'
25051 3' -60.6 NC_005336.1 + 105534 0.76 0.229758
Target:  5'- gCCGCGCGCGuGCGCcgGggGCagGCUC-CCg -3'
miRNA:   3'- -GGCGCGCGC-CGCG--CuaCGa-CGAGaGG- -5'
25051 3' -60.6 NC_005336.1 + 136477 0.78 0.156138
Target:  5'- uCCGCGCGCaagGGCGCGcUGCUGCUg--- -3'
miRNA:   3'- -GGCGCGCG---CCGCGCuACGACGAgagg -5'
25051 3' -60.6 NC_005336.1 + 129811 0.78 0.153842
Target:  5'- cUCGCGCGCGGCgacugcagagcucguGCGcAUGCUGCUCg-- -3'
miRNA:   3'- -GGCGCGCGCCG---------------CGC-UACGACGAGagg -5'
25051 3' -60.6 NC_005336.1 + 74469 0.84 0.06244
Target:  5'- gCC-CGCGCGGCGCG-UGCUGCUCgcgaCCa -3'
miRNA:   3'- -GGcGCGCGCCGCGCuACGACGAGa---GG- -5'
25051 3' -60.6 NC_005336.1 + 15553 0.8 0.115684
Target:  5'- gCCGCGCGCGGCGCGGgucGC-GUUUUCg -3'
miRNA:   3'- -GGCGCGCGCCGCGCUa--CGaCGAGAGg -5'
25051 3' -60.6 NC_005336.1 + 127093 0.8 0.127946
Target:  5'- aCCcCGaCGCGGUGCGAcUGCUGCUCgCCg -3'
miRNA:   3'- -GGcGC-GCGCCGCGCU-ACGACGAGaGG- -5'
25051 3' -60.6 NC_005336.1 + 130633 0.8 0.127946
Target:  5'- gCGCGCGCuGCGCGAcUGCgUGCUC-CCg -3'
miRNA:   3'- gGCGCGCGcCGCGCU-ACG-ACGAGaGG- -5'
25051 3' -60.6 NC_005336.1 + 32261 0.79 0.139302
Target:  5'- aCCGCGCGgaagccgguguucauCGGCGCGAUGCcgUGCUggucauggacCUCCa -3'
miRNA:   3'- -GGCGCGC---------------GCCGCGCUACG--ACGA----------GAGG- -5'
25051 3' -60.6 NC_005336.1 + 131524 0.79 0.1414
Target:  5'- cCCGCGCGCGaGCGUcAUGCgcgaGCUCaUCCg -3'
miRNA:   3'- -GGCGCGCGC-CGCGcUACGa---CGAG-AGG- -5'
25051 3' -60.6 NC_005336.1 + 124291 0.79 0.144961
Target:  5'- gUGCGUGCGGCGCagccgccgccGGUaCUGCUCUCCc -3'
miRNA:   3'- gGCGCGCGCCGCG----------CUAcGACGAGAGG- -5'
25051 3' -60.6 NC_005336.1 + 126379 0.79 0.144961
Target:  5'- aCGCuGCGCGaGCGCGAUGC-GCUCgaagCCc -3'
miRNA:   3'- gGCG-CGCGC-CGCGCUACGaCGAGa---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.