miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25052 3' -58.8 NC_005336.1 + 127055 0.66 0.779822
Target:  5'- -cGCGCCgCUGCACaUGCUcauGcgcggcaacccgcuaGACCCCGa -3'
miRNA:   3'- caUGCGG-GACGUGgACGA---C---------------UUGGGGC- -5'
25052 3' -58.8 NC_005336.1 + 44301 0.66 0.776127
Target:  5'- -cGCGCagaCUGCGCagCUGCUGGGCUaCGg -3'
miRNA:   3'- caUGCGg--GACGUG--GACGACUUGGgGC- -5'
25052 3' -58.8 NC_005336.1 + 99764 0.66 0.776127
Target:  5'- -gAgGCgCUGCGgCUGCUGGugCgCCGc -3'
miRNA:   3'- caUgCGgGACGUgGACGACUugG-GGC- -5'
25052 3' -58.8 NC_005336.1 + 76201 0.66 0.776127
Target:  5'- -aGCGCCC-GCAUa--CUGAGCCUCGc -3'
miRNA:   3'- caUGCGGGaCGUGgacGACUUGGGGC- -5'
25052 3' -58.8 NC_005336.1 + 85895 0.66 0.776127
Target:  5'- cGUGCGCCUcaccaaCGCCUGCggguccaaggUGGACUCCa -3'
miRNA:   3'- -CAUGCGGGac----GUGGACG----------ACUUGGGGc -5'
25052 3' -58.8 NC_005336.1 + 79513 0.66 0.766801
Target:  5'- -cACGCUgCcGUACCUGgUGGGCCUCGc -3'
miRNA:   3'- caUGCGG-GaCGUGGACgACUUGGGGC- -5'
25052 3' -58.8 NC_005336.1 + 19947 0.66 0.766801
Target:  5'- -gGCGCgCCaGUuUCUGCUG-GCCCCGu -3'
miRNA:   3'- caUGCG-GGaCGuGGACGACuUGGGGC- -5'
25052 3' -58.8 NC_005336.1 + 48127 0.66 0.766801
Target:  5'- gGUGCGCCggcGCGCUUGCcGGGCUCaCGa -3'
miRNA:   3'- -CAUGCGGga-CGUGGACGaCUUGGG-GC- -5'
25052 3' -58.8 NC_005336.1 + 28811 0.66 0.766801
Target:  5'- -cGCGCCCgagaGCGCgCaGCUcaaaGGGCCCCa -3'
miRNA:   3'- caUGCGGGa---CGUG-GaCGA----CUUGGGGc -5'
25052 3' -58.8 NC_005336.1 + 46530 0.66 0.757357
Target:  5'- -aGCGCCaCguuuaGCACCggGCUguucccGAACCCCa -3'
miRNA:   3'- caUGCGG-Ga----CGUGGa-CGA------CUUGGGGc -5'
25052 3' -58.8 NC_005336.1 + 123138 0.66 0.757357
Target:  5'- -cACGCCgCUGC-CCUGCgccuuccuGCCgCCGg -3'
miRNA:   3'- caUGCGG-GACGuGGACGacu-----UGG-GGC- -5'
25052 3' -58.8 NC_005336.1 + 124053 0.66 0.756407
Target:  5'- -cGCGgCCgcgGCGCUcGCUcagcgaaGAGCCCCGg -3'
miRNA:   3'- caUGCgGGa--CGUGGaCGA-------CUUGGGGC- -5'
25052 3' -58.8 NC_005336.1 + 34046 0.66 0.747804
Target:  5'- cGUGCGUCCUGC-CCgagcGCgugGAuaagcuacuaGCCCCu -3'
miRNA:   3'- -CAUGCGGGACGuGGa---CGa--CU----------UGGGGc -5'
25052 3' -58.8 NC_005336.1 + 118427 0.66 0.747804
Target:  5'- -gGCGUCC-GCAgCUGCUGAGaaagUCCCu -3'
miRNA:   3'- caUGCGGGaCGUgGACGACUU----GGGGc -5'
25052 3' -58.8 NC_005336.1 + 123700 0.66 0.747804
Target:  5'- -cACGCCgCUGCACCaccacGC-GGACUCCu -3'
miRNA:   3'- caUGCGG-GACGUGGa----CGaCUUGGGGc -5'
25052 3' -58.8 NC_005336.1 + 127832 0.66 0.738151
Target:  5'- --cCGgCCUGCGCgcggCUGCUGGccgcgggcgcggACCCCGc -3'
miRNA:   3'- cauGCgGGACGUG----GACGACU------------UGGGGC- -5'
25052 3' -58.8 NC_005336.1 + 55558 0.66 0.738151
Target:  5'- aGUGgGCCgUGCuCgaGCaGAACCCCa -3'
miRNA:   3'- -CAUgCGGgACGuGgaCGaCUUGGGGc -5'
25052 3' -58.8 NC_005336.1 + 51528 0.66 0.738151
Target:  5'- -cGCGUgCUGUACCUaucGCUGuacGACUCCGu -3'
miRNA:   3'- caUGCGgGACGUGGA---CGAC---UUGGGGC- -5'
25052 3' -58.8 NC_005336.1 + 133993 0.66 0.738151
Target:  5'- cGUGCGCCCUGcCGCC-GgaGAucgugACCuCCa -3'
miRNA:   3'- -CAUGCGGGAC-GUGGaCgaCU-----UGG-GGc -5'
25052 3' -58.8 NC_005336.1 + 94162 0.66 0.738151
Target:  5'- -aGCGCagcugCUGCGCCUGUUcccGCCCCc -3'
miRNA:   3'- caUGCGg----GACGUGGACGAcu-UGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.