miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25052 3' -58.8 NC_005336.1 + 122718 1.09 0.001334
Target:  5'- cGUACGCCCUGCACCUGCUGAACCCCGa -3'
miRNA:   3'- -CAUGCGGGACGUGGACGACUUGGGGC- -5'
25052 3' -58.8 NC_005336.1 + 115305 0.83 0.085122
Target:  5'- -cGCGCCCugccagggcauggUGCugCUGCUGAGCCCCu -3'
miRNA:   3'- caUGCGGG-------------ACGugGACGACUUGGGGc -5'
25052 3' -58.8 NC_005336.1 + 68739 0.78 0.180363
Target:  5'- -cGCGCCCUgGCugCUGCgcgacgcgacGAGCCCCGa -3'
miRNA:   3'- caUGCGGGA-CGugGACGa---------CUUGGGGC- -5'
25052 3' -58.8 NC_005336.1 + 44805 0.77 0.21974
Target:  5'- -cGCGCaCUGCugCUGgUGAACCCCa -3'
miRNA:   3'- caUGCGgGACGugGACgACUUGGGGc -5'
25052 3' -58.8 NC_005336.1 + 101473 0.76 0.253903
Target:  5'- ---aGCCCUcgcGCGCCUGCgUGGACUCCGa -3'
miRNA:   3'- caugCGGGA---CGUGGACG-ACUUGGGGC- -5'
25052 3' -58.8 NC_005336.1 + 48402 0.75 0.272563
Target:  5'- -cGCGCCUUGCGCa-GCUGcACCCCa -3'
miRNA:   3'- caUGCGGGACGUGgaCGACuUGGGGc -5'
25052 3' -58.8 NC_005336.1 + 90110 0.74 0.327668
Target:  5'- -gACGUUgUGCGgCUGCUGAugCCCGc -3'
miRNA:   3'- caUGCGGgACGUgGACGACUugGGGC- -5'
25052 3' -58.8 NC_005336.1 + 121702 0.73 0.382313
Target:  5'- -cACGCCCgggugGaCGCCggUGCUGGACCUCGc -3'
miRNA:   3'- caUGCGGGa----C-GUGG--ACGACUUGGGGC- -5'
25052 3' -58.8 NC_005336.1 + 47870 0.73 0.382313
Target:  5'- cGUGcCGCCCUucacccGCaACCUGCUGAagACUCCGu -3'
miRNA:   3'- -CAU-GCGGGA------CG-UGGACGACU--UGGGGC- -5'
25052 3' -58.8 NC_005336.1 + 127484 0.72 0.407519
Target:  5'- -cACGCCaCUGCAcgccuuCCUGCgaucccgcgacgUGGACCCCGc -3'
miRNA:   3'- caUGCGG-GACGU------GGACG------------ACUUGGGGC- -5'
25052 3' -58.8 NC_005336.1 + 113181 0.72 0.407519
Target:  5'- uGUACGCCUUcauccagcGCACCgagaaGCUGGACUCCu -3'
miRNA:   3'- -CAUGCGGGA--------CGUGGa----CGACUUGGGGc -5'
25052 3' -58.8 NC_005336.1 + 63603 0.72 0.407519
Target:  5'- ---gGCCgUGaACCUGCUGcGCCCCGg -3'
miRNA:   3'- caugCGGgACgUGGACGACuUGGGGC- -5'
25052 3' -58.8 NC_005336.1 + 104696 0.71 0.441795
Target:  5'- -cGCGCUCUcGCACCccgaggcUGCUGcggacGACCCCGa -3'
miRNA:   3'- caUGCGGGA-CGUGG-------ACGAC-----UUGGGGC- -5'
25052 3' -58.8 NC_005336.1 + 35324 0.71 0.451755
Target:  5'- -aGCGCCCcGCGCgaGCgGAugCCCa -3'
miRNA:   3'- caUGCGGGaCGUGgaCGaCUugGGGc -5'
25052 3' -58.8 NC_005336.1 + 133122 0.71 0.451755
Target:  5'- -gACGCCgCUgGCgGCgCUGCUGGGCUCCGg -3'
miRNA:   3'- caUGCGG-GA-CG-UG-GACGACUUGGGGC- -5'
25052 3' -58.8 NC_005336.1 + 134061 0.71 0.460915
Target:  5'- cUGCGCC--GCGCCaUGCUGAcccGCCCCu -3'
miRNA:   3'- cAUGCGGgaCGUGG-ACGACU---UGGGGc -5'
25052 3' -58.8 NC_005336.1 + 49593 0.71 0.470172
Target:  5'- -cAUGCCCUGCaACCUGCUcGACCguCUGg -3'
miRNA:   3'- caUGCGGGACG-UGGACGAcUUGG--GGC- -5'
25052 3' -58.8 NC_005336.1 + 64887 0.7 0.517787
Target:  5'- -gGCGCCUcgUGUACgUGgUGGACCCUGc -3'
miRNA:   3'- caUGCGGG--ACGUGgACgACUUGGGGC- -5'
25052 3' -58.8 NC_005336.1 + 90266 0.7 0.527546
Target:  5'- --cCGCCgCUGCACCgGCgcgcgGAGCCCgGc -3'
miRNA:   3'- cauGCGG-GACGUGGaCGa----CUUGGGgC- -5'
25052 3' -58.8 NC_005336.1 + 99879 0.7 0.537373
Target:  5'- -cGCGCCCUGCGCgaGCcuggagGAGCUgCGc -3'
miRNA:   3'- caUGCGGGACGUGgaCGa-----CUUGGgGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.