miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25052 3' -58.8 NC_005336.1 + 93791 0.67 0.705696
Target:  5'- -cGCGCCgCUgcggcgacuccuguGCugCUGCUGGACCgaguuCCGg -3'
miRNA:   3'- caUGCGG-GA--------------CGugGACGACUUGG-----GGC- -5'
25052 3' -58.8 NC_005336.1 + 46400 0.68 0.658395
Target:  5'- -cGCGCCCgcgcgggGCGCCUGUuugGAcgACUCCa -3'
miRNA:   3'- caUGCGGGa------CGUGGACGa--CU--UGGGGc -5'
25052 3' -58.8 NC_005336.1 + 47602 0.68 0.668527
Target:  5'- -gGCGCCgcgCUGCacACCUGC--GACCCCa -3'
miRNA:   3'- caUGCGG---GACG--UGGACGacUUGGGGc -5'
25052 3' -58.8 NC_005336.1 + 133962 0.68 0.668527
Target:  5'- -cGCGCuuCCUGCGCCgGCUG-GCCgCGc -3'
miRNA:   3'- caUGCG--GGACGUGGaCGACuUGGgGC- -5'
25052 3' -58.8 NC_005336.1 + 29770 0.67 0.688696
Target:  5'- -cGCGCCCUcGCgcaccGCCUGCgcGAACUCgCGg -3'
miRNA:   3'- caUGCGGGA-CG-----UGGACGa-CUUGGG-GC- -5'
25052 3' -58.8 NC_005336.1 + 74867 0.67 0.688696
Target:  5'- -gGCGCgCCUGCG-CUGCUGGGgCgCGg -3'
miRNA:   3'- caUGCG-GGACGUgGACGACUUgGgGC- -5'
25052 3' -58.8 NC_005336.1 + 9660 0.67 0.688696
Target:  5'- cUGCGUCCgagaGCGCCUGCgcGGCCgCGg -3'
miRNA:   3'- cAUGCGGGa---CGUGGACGacUUGGgGC- -5'
25052 3' -58.8 NC_005336.1 + 123268 0.67 0.698715
Target:  5'- -cACGCCCgUGCACCUGUacgcGAGCUacgCGg -3'
miRNA:   3'- caUGCGGG-ACGUGGACGa---CUUGGg--GC- -5'
25052 3' -58.8 NC_005336.1 + 129394 0.67 0.698715
Target:  5'- --cCGUCgUGCGCgcgCUGCUGGACgCCGg -3'
miRNA:   3'- cauGCGGgACGUG---GACGACUUGgGGC- -5'
25052 3' -58.8 NC_005336.1 + 58835 0.68 0.627905
Target:  5'- -cGCGCCCUGCgcaGCCUGCgc-GCUgCGc -3'
miRNA:   3'- caUGCGGGACG---UGGACGacuUGGgGC- -5'
25052 3' -58.8 NC_005336.1 + 56322 0.68 0.617738
Target:  5'- ---aGCUCaUGUACCUGCUGGGCaCCUa -3'
miRNA:   3'- caugCGGG-ACGUGGACGACUUG-GGGc -5'
25052 3' -58.8 NC_005336.1 + 130945 0.68 0.616722
Target:  5'- -gACGCCgCUGCACCUGUacuUGcacacgcGACaCCCGc -3'
miRNA:   3'- caUGCGG-GACGUGGACG---AC-------UUG-GGGC- -5'
25052 3' -58.8 NC_005336.1 + 68739 0.78 0.180363
Target:  5'- -cGCGCCCUgGCugCUGCgcgacgcgacGAGCCCCGa -3'
miRNA:   3'- caUGCGGGA-CGugGACGa---------CUUGGGGC- -5'
25052 3' -58.8 NC_005336.1 + 127484 0.72 0.407519
Target:  5'- -cACGCCaCUGCAcgccuuCCUGCgaucccgcgacgUGGACCCCGc -3'
miRNA:   3'- caUGCGG-GACGU------GGACG------------ACUUGGGGC- -5'
25052 3' -58.8 NC_005336.1 + 104696 0.71 0.441795
Target:  5'- -cGCGCUCUcGCACCccgaggcUGCUGcggacGACCCCGa -3'
miRNA:   3'- caUGCGGGA-CGUGG-------ACGAC-----UUGGGGC- -5'
25052 3' -58.8 NC_005336.1 + 35324 0.71 0.451755
Target:  5'- -aGCGCCCcGCGCgaGCgGAugCCCa -3'
miRNA:   3'- caUGCGGGaCGUGgaCGaCUugGGGc -5'
25052 3' -58.8 NC_005336.1 + 37801 0.7 0.537373
Target:  5'- -cACGUCCaggUGCGC--GCUGAGCCCCa -3'
miRNA:   3'- caUGCGGG---ACGUGgaCGACUUGGGGc -5'
25052 3' -58.8 NC_005336.1 + 99879 0.7 0.537373
Target:  5'- -cGCGCCCUGCGCgaGCcuggagGAGCUgCGc -3'
miRNA:   3'- caUGCGGGACGUGgaCGa-----CUUGGgGC- -5'
25052 3' -58.8 NC_005336.1 + 53651 0.69 0.567206
Target:  5'- cGUGUGCaagauaCUGCACCUGCccGAGCaCCCGc -3'
miRNA:   3'- -CAUGCGg-----GACGUGGACGa-CUUG-GGGC- -5'
25052 3' -58.8 NC_005336.1 + 18897 0.69 0.577249
Target:  5'- -aGCGCCUUGCGCCacacGAACUCCGc -3'
miRNA:   3'- caUGCGGGACGUGGacgaCUUGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.