miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25052 5' -54.2 NC_005336.1 + 41054 0.66 0.942948
Target:  5'- cGCuGCGuCggCGACGUGGUGguGuCg -3'
miRNA:   3'- aUGcCGCuGuaGCUGUACCACguCuG- -5'
25052 5' -54.2 NC_005336.1 + 115761 0.66 0.942948
Target:  5'- gUACGG-GGCAUgGACGUccGGUGCGcGAa -3'
miRNA:   3'- -AUGCCgCUGUAgCUGUA--CCACGU-CUg -5'
25052 5' -54.2 NC_005336.1 + 19270 0.66 0.942948
Target:  5'- aACGGCGucguuggugcCGUCGAUgccucaGUGGuUGCGGAUg -3'
miRNA:   3'- aUGCCGCu---------GUAGCUG------UACC-ACGUCUG- -5'
25052 5' -54.2 NC_005336.1 + 75344 0.66 0.938152
Target:  5'- gGCGGCGuCAUCu-CGUGGcUGUucAGGCg -3'
miRNA:   3'- aUGCCGCuGUAGcuGUACC-ACG--UCUG- -5'
25052 5' -54.2 NC_005336.1 + 15127 0.66 0.938152
Target:  5'- cGCGGaCGGC-UCGcGCG-GGUGCAGcACg -3'
miRNA:   3'- aUGCC-GCUGuAGC-UGUaCCACGUC-UG- -5'
25052 5' -54.2 NC_005336.1 + 92506 0.66 0.938152
Target:  5'- gGCGGCGGCAagUCccGCGaGG-GCAGGCu -3'
miRNA:   3'- aUGCCGCUGU--AGc-UGUaCCaCGUCUG- -5'
25052 5' -54.2 NC_005336.1 + 34639 0.66 0.938152
Target:  5'- cGCGcGCGuuCAUCuGCGUGGUGaAGACc -3'
miRNA:   3'- aUGC-CGCu-GUAGcUGUACCACgUCUG- -5'
25052 5' -54.2 NC_005336.1 + 104162 0.66 0.937659
Target:  5'- cGCGGCguacuccaagaucGACGUcaaCGGCGUGGUGCGc-- -3'
miRNA:   3'- aUGCCG-------------CUGUA---GCUGUACCACGUcug -5'
25052 5' -54.2 NC_005336.1 + 45844 0.66 0.933106
Target:  5'- -cCGGCGACGUgGauuGCGUGG-GCGG-Cg -3'
miRNA:   3'- auGCCGCUGUAgC---UGUACCaCGUCuG- -5'
25052 5' -54.2 NC_005336.1 + 136003 0.66 0.933106
Target:  5'- aGCGGCuGGCcgCGGCGcUGGcggccGCGGGCc -3'
miRNA:   3'- aUGCCG-CUGuaGCUGU-ACCa----CGUCUG- -5'
25052 5' -54.2 NC_005336.1 + 93627 0.66 0.933106
Target:  5'- cGCGGCuGCGUCGGCGcuucGUGCAcGCg -3'
miRNA:   3'- aUGCCGcUGUAGCUGUac--CACGUcUG- -5'
25052 5' -54.2 NC_005336.1 + 136003 0.66 0.933106
Target:  5'- aGCGGCuGGCcgCGGCGcUGGcggccGCGGGCc -3'
miRNA:   3'- aUGCCG-CUGuaGCUGU-ACCa----CGUCUG- -5'
25052 5' -54.2 NC_005336.1 + 105049 0.66 0.933106
Target:  5'- cUGCGGCGACAUCGcgGCGcGGcucaacgGCAcGCa -3'
miRNA:   3'- -AUGCCGCUGUAGC--UGUaCCa------CGUcUG- -5'
25052 5' -54.2 NC_005336.1 + 94261 0.66 0.927807
Target:  5'- cGCGGCGAgGugcUCGACGgcgcGGUGUccagcccgcuGGGCg -3'
miRNA:   3'- aUGCCGCUgU---AGCUGUa---CCACG----------UCUG- -5'
25052 5' -54.2 NC_005336.1 + 110908 0.66 0.927807
Target:  5'- cGCGGCGGuguUCGACGUGacgcUGCuGGCg -3'
miRNA:   3'- aUGCCGCUgu-AGCUGUACc---ACGuCUG- -5'
25052 5' -54.2 NC_005336.1 + 99415 0.66 0.927807
Target:  5'- cGCGcGCGAgGacuUCGACGcGGUGCAcGCg -3'
miRNA:   3'- aUGC-CGCUgU---AGCUGUaCCACGUcUG- -5'
25052 5' -54.2 NC_005336.1 + 13136 0.66 0.922256
Target:  5'- --aGGCGccgagguccuCGUCGGCuGUGGgcgGCAGACg -3'
miRNA:   3'- augCCGCu---------GUAGCUG-UACCa--CGUCUG- -5'
25052 5' -54.2 NC_005336.1 + 101420 0.66 0.921116
Target:  5'- gGCGGUGGCGgacgCGGCcgcgcgcGUGGUcgcgcucccggacGCGGACg -3'
miRNA:   3'- aUGCCGCUGUa---GCUG-------UACCA-------------CGUCUG- -5'
25052 5' -54.2 NC_005336.1 + 51651 0.66 0.916453
Target:  5'- gACGGCGACGcgcuacugaUCGagcugcccgaggGCcgGGUGCcGGCg -3'
miRNA:   3'- aUGCCGCUGU---------AGC------------UGuaCCACGuCUG- -5'
25052 5' -54.2 NC_005336.1 + 116209 0.66 0.916453
Target:  5'- --gGGCGugAUCuuCGUGGUcGCGGAa -3'
miRNA:   3'- augCCGCugUAGcuGUACCA-CGUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.