miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25053 5' -54.5 NC_005336.1 + 88914 0.66 0.938769
Target:  5'- aGUCuAGGaAGUACUUCUCGAuGUcGCGc -3'
miRNA:   3'- -UAGcUCC-UCAUGAAGAGCUcCGuCGC- -5'
25053 5' -54.5 NC_005336.1 + 130884 0.66 0.938769
Target:  5'- -gCGAGGuGGUcauGCUUCUCGcacaGGGC-GCGg -3'
miRNA:   3'- uaGCUCC-UCA---UGAAGAGC----UCCGuCGC- -5'
25053 5' -54.5 NC_005336.1 + 27726 0.66 0.93378
Target:  5'- uUCGAGGAGcaccGCgacCUCGAgcgcugcaagcGGCAGCu -3'
miRNA:   3'- uAGCUCCUCa---UGaa-GAGCU-----------CCGUCGc -5'
25053 5' -54.5 NC_005336.1 + 135174 0.66 0.93378
Target:  5'- aGUgGAuGGGGUGCUUUUUGGGGUGGa- -3'
miRNA:   3'- -UAgCU-CCUCAUGAAGAGCUCCGUCgc -5'
25053 5' -54.5 NC_005336.1 + 120211 0.66 0.928542
Target:  5'- -cCGAGGAccUGCUcgaagagcUCUCGcGGCGGCGc -3'
miRNA:   3'- uaGCUCCUc-AUGA--------AGAGCuCCGUCGC- -5'
25053 5' -54.5 NC_005336.1 + 80163 0.66 0.928542
Target:  5'- gGUCGGGGuccgcGUACaUCUCcagcGGCAGCa -3'
miRNA:   3'- -UAGCUCCu----CAUGaAGAGcu--CCGUCGc -5'
25053 5' -54.5 NC_005336.1 + 33825 0.66 0.924726
Target:  5'- cGUCGGGGgaaaagaAGUugUUCUCcacgaugcucgagacGAGGCuGGCGa -3'
miRNA:   3'- -UAGCUCC-------UCAugAAGAG---------------CUCCG-UCGC- -5'
25053 5' -54.5 NC_005336.1 + 121219 0.66 0.919641
Target:  5'- --gGAGGAGUACgugcgccgguucgcgUUCUCG-GGCucGCGg -3'
miRNA:   3'- uagCUCCUCAUG---------------AAGAGCuCCGu-CGC- -5'
25053 5' -54.5 NC_005336.1 + 72888 0.66 0.917316
Target:  5'- cUCGAGGuGUACaacUCUgcggagaacaaCGAcGGCGGCGa -3'
miRNA:   3'- uAGCUCCuCAUGa--AGA-----------GCU-CCGUCGC- -5'
25053 5' -54.5 NC_005336.1 + 112075 0.66 0.917316
Target:  5'- cUCGAGGucgcGGUGCUcCUCGAagcgccGCAGCa -3'
miRNA:   3'- uAGCUCC----UCAUGAaGAGCUc-----CGUCGc -5'
25053 5' -54.5 NC_005336.1 + 39596 0.66 0.917316
Target:  5'- -cCGAGGAGUACg--UCGAcGGCuucGGCa -3'
miRNA:   3'- uaGCUCCUCAUGaagAGCU-CCG---UCGc -5'
25053 5' -54.5 NC_005336.1 + 100783 0.66 0.917316
Target:  5'- uUCGAGGAGgucGCgcgC-CGGGGCucGCGg -3'
miRNA:   3'- uAGCUCCUCa--UGaa-GaGCUCCGu-CGC- -5'
25053 5' -54.5 NC_005336.1 + 46786 0.66 0.911329
Target:  5'- ----cGGAGcACUUCUCGAGGUccuccauggacAGCGu -3'
miRNA:   3'- uagcuCCUCaUGAAGAGCUCCG-----------UCGC- -5'
25053 5' -54.5 NC_005336.1 + 71478 0.66 0.911329
Target:  5'- aGUCGcuguccaagcuGGGGUACgugCUCGuGGGCGGCa -3'
miRNA:   3'- -UAGCu----------CCUCAUGaa-GAGC-UCCGUCGc -5'
25053 5' -54.5 NC_005336.1 + 40019 0.67 0.898616
Target:  5'- -aCGAGGcAGUACgaggUCaCGugcGGGCAGCGc -3'
miRNA:   3'- uaGCUCC-UCAUGa---AGaGC---UCCGUCGC- -5'
25053 5' -54.5 NC_005336.1 + 50191 0.67 0.898616
Target:  5'- --aGAGGGGUGCg---CGGccGGCGGCGa -3'
miRNA:   3'- uagCUCCUCAUGaagaGCU--CCGUCGC- -5'
25053 5' -54.5 NC_005336.1 + 79118 0.67 0.891895
Target:  5'- uAUCGGGGAa-GCc-CUCGGGGUAGCa -3'
miRNA:   3'- -UAGCUCCUcaUGaaGAGCUCCGUCGc -5'
25053 5' -54.5 NC_005336.1 + 125720 0.68 0.87032
Target:  5'- uUCGucagcGGAG-ACcaggugCUCGAGGCGGCGc -3'
miRNA:   3'- uAGCu----CCUCaUGaa----GAGCUCCGUCGC- -5'
25053 5' -54.5 NC_005336.1 + 17421 0.68 0.87032
Target:  5'- cUCGAGaAGUACUcCUCGAugcGcGCGGCGa -3'
miRNA:   3'- uAGCUCcUCAUGAaGAGCU---C-CGUCGC- -5'
25053 5' -54.5 NC_005336.1 + 33758 0.68 0.854812
Target:  5'- -cCGAGGA-UGCgcgUCUCGA-GCGGCGu -3'
miRNA:   3'- uaGCUCCUcAUGa--AGAGCUcCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.