miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25053 5' -54.5 NC_005336.1 + 122383 1.08 0.004018
Target:  5'- cAUCGAGGAGUACUUCUCGAGGCAGCGg -3'
miRNA:   3'- -UAGCUCCUCAUGAAGAGCUCCGUCGC- -5'
25053 5' -54.5 NC_005336.1 + 133055 0.73 0.570772
Target:  5'- -gCGAGGAcGUGCUgcggcugcugCUCGAGcGCGGCGc -3'
miRNA:   3'- uaGCUCCU-CAUGAa---------GAGCUC-CGUCGC- -5'
25053 5' -54.5 NC_005336.1 + 101074 0.72 0.622818
Target:  5'- -gCGGGcGGcagaccUACUUCUCGGGGCGGCGc -3'
miRNA:   3'- uaGCUCcUC------AUGAAGAGCUCCGUCGC- -5'
25053 5' -54.5 NC_005336.1 + 111978 0.72 0.633282
Target:  5'- --aGAGGAcGUugUuuuUCUCGAuGGCGGCGg -3'
miRNA:   3'- uagCUCCU-CAugA---AGAGCU-CCGUCGC- -5'
25053 5' -54.5 NC_005336.1 + 115096 0.72 0.633282
Target:  5'- -aCGAGGuGUACUUCaaGAGGCuGUGu -3'
miRNA:   3'- uaGCUCCuCAUGAAGagCUCCGuCGC- -5'
25053 5' -54.5 NC_005336.1 + 18595 0.72 0.654197
Target:  5'- uGUCgGAGGAGUGucugcuCUUUUCcgaGGGGCAGCGg -3'
miRNA:   3'- -UAG-CUCCUCAU------GAAGAG---CUCCGUCGC- -5'
25053 5' -54.5 NC_005336.1 + 24078 0.71 0.685407
Target:  5'- gGUCGcGGGGGgcCUUCUCGGcGGCAauGCGg -3'
miRNA:   3'- -UAGC-UCCUCauGAAGAGCU-CCGU--CGC- -5'
25053 5' -54.5 NC_005336.1 + 130409 0.7 0.746322
Target:  5'- uUCGuagcGGAGUGCUUagcgGAGGUAGCGg -3'
miRNA:   3'- uAGCu---CCUCAUGAAgag-CUCCGUCGC- -5'
25053 5' -54.5 NC_005336.1 + 30369 0.69 0.821327
Target:  5'- -cCGAGGAGcUGCUgcgcacgCUCaAGGCGGCc -3'
miRNA:   3'- uaGCUCCUC-AUGAa------GAGcUCCGUCGc -5'
25053 5' -54.5 NC_005336.1 + 127277 0.68 0.827409
Target:  5'- -gCGAGGAugucgGUGCUgcugggucugucgaUCUCGGcGGCAGUGg -3'
miRNA:   3'- uaGCUCCU-----CAUGA--------------AGAGCU-CCGUCGC- -5'
25053 5' -54.5 NC_005336.1 + 29659 0.68 0.829988
Target:  5'- -aCGAGGAGUgGCUcuccgcgCUCGAGGCcauGCc -3'
miRNA:   3'- uaGCUCCUCA-UGAa------GAGCUCCGu--CGc -5'
25053 5' -54.5 NC_005336.1 + 10383 0.68 0.838461
Target:  5'- -gCGGGGGGgcggGCUgucUUCGaAGGCGGCGc -3'
miRNA:   3'- uaGCUCCUCa---UGAa--GAGC-UCCGUCGC- -5'
25053 5' -54.5 NC_005336.1 + 73385 0.68 0.846738
Target:  5'- cGUCGAGGccguccucGGcACgcg-CGAGGCAGCGg -3'
miRNA:   3'- -UAGCUCC--------UCaUGaagaGCUCCGUCGC- -5'
25053 5' -54.5 NC_005336.1 + 33758 0.68 0.854812
Target:  5'- -cCGAGGA-UGCgcgUCUCGA-GCGGCGu -3'
miRNA:   3'- uaGCUCCUcAUGa--AGAGCUcCGUCGC- -5'
25053 5' -54.5 NC_005336.1 + 84849 0.68 0.854812
Target:  5'- uGUCGAGGGcgGCUgccgCUCGuGGCGGaCGc -3'
miRNA:   3'- -UAGCUCCUcaUGAa---GAGCuCCGUC-GC- -5'
25053 5' -54.5 NC_005336.1 + 125720 0.68 0.87032
Target:  5'- uUCGucagcGGAG-ACcaggugCUCGAGGCGGCGc -3'
miRNA:   3'- uAGCu----CCUCaUGaa----GAGCUCCGUCGC- -5'
25053 5' -54.5 NC_005336.1 + 17421 0.68 0.87032
Target:  5'- cUCGAGaAGUACUcCUCGAugcGcGCGGCGa -3'
miRNA:   3'- uAGCUCcUCAUGAaGAGCU---C-CGUCGC- -5'
25053 5' -54.5 NC_005336.1 + 79118 0.67 0.891895
Target:  5'- uAUCGGGGAa-GCc-CUCGGGGUAGCa -3'
miRNA:   3'- -UAGCUCCUcaUGaaGAGCUCCGUCGc -5'
25053 5' -54.5 NC_005336.1 + 40019 0.67 0.898616
Target:  5'- -aCGAGGcAGUACgaggUCaCGugcGGGCAGCGc -3'
miRNA:   3'- uaGCUCC-UCAUGa---AGaGC---UCCGUCGC- -5'
25053 5' -54.5 NC_005336.1 + 50191 0.67 0.898616
Target:  5'- --aGAGGGGUGCg---CGGccGGCGGCGa -3'
miRNA:   3'- uagCUCCUCAUGaagaGCU--CCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.