miRNA display CGI


Results 1 - 20 of 28 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25054 3' -53.6 NC_005336.1 + 77569 0.66 0.961327
Target:  5'- aUCCGcuucUCGAAGaAGUACCUUGaGUUCg -3'
miRNA:   3'- -GGGCacu-AGCUUC-UCAUGGAGC-CGAG- -5'
25054 3' -53.6 NC_005336.1 + 59017 0.66 0.961327
Target:  5'- aCCGaGAUCGAGuccgACCUCGGC-Cg -3'
miRNA:   3'- gGGCaCUAGCUUcucaUGGAGCCGaG- -5'
25054 3' -53.6 NC_005336.1 + 86428 0.66 0.961327
Target:  5'- gCCGUGAagcgCGAGGucaGCUUCGGCg- -3'
miRNA:   3'- gGGCACUa---GCUUCucaUGGAGCCGag -5'
25054 3' -53.6 NC_005336.1 + 58938 0.66 0.957674
Target:  5'- uCCCGUcuUCGAGGAG---CUCGGCa- -3'
miRNA:   3'- -GGGCAcuAGCUUCUCaugGAGCCGag -5'
25054 3' -53.6 NC_005336.1 + 39877 0.66 0.953793
Target:  5'- uUCGUGGUCGccGGGcggcguccGCC-CGGCUCg -3'
miRNA:   3'- gGGCACUAGCuuCUCa-------UGGaGCCGAG- -5'
25054 3' -53.6 NC_005336.1 + 74985 0.66 0.953793
Target:  5'- uCCCGUcgucGUCGAAGAGgcGCCcgcCGcGCUCg -3'
miRNA:   3'- -GGGCAc---UAGCUUCUCa-UGGa--GC-CGAG- -5'
25054 3' -53.6 NC_005336.1 + 67424 0.66 0.953793
Target:  5'- gCCCGUGGU---AGAGcACCUCgGGCa- -3'
miRNA:   3'- -GGGCACUAgcuUCUCaUGGAG-CCGag -5'
25054 3' -53.6 NC_005336.1 + 51350 0.66 0.953793
Target:  5'- gCCGaGGUCGAuGucgGCCUCGGCg- -3'
miRNA:   3'- gGGCaCUAGCUuCucaUGGAGCCGag -5'
25054 3' -53.6 NC_005336.1 + 66425 0.67 0.951352
Target:  5'- gCCCGUGAaguucaUCGGcgaguucucgcaggaGGGGUACCUgcugCGGC-Cg -3'
miRNA:   3'- -GGGCACU------AGCU---------------UCUCAUGGA----GCCGaG- -5'
25054 3' -53.6 NC_005336.1 + 18488 0.67 0.949678
Target:  5'- cUCCGUGG-CGcAGAGUGCgUCGuGCa- -3'
miRNA:   3'- -GGGCACUaGCuUCUCAUGgAGC-CGag -5'
25054 3' -53.6 NC_005336.1 + 30259 0.67 0.949253
Target:  5'- gCCGUGAuaaggUCGggGAgccugacGUGCUgCGGCUg -3'
miRNA:   3'- gGGCACU-----AGCuuCU-------CAUGGaGCCGAg -5'
25054 3' -53.6 NC_005336.1 + 23873 0.67 0.935899
Target:  5'- uUCGUGGUCGgcGAGgucacuuCCUgCGGCgUCg -3'
miRNA:   3'- gGGCACUAGCuuCUCau-----GGA-GCCG-AG- -5'
25054 3' -53.6 NC_005336.1 + 80393 0.67 0.930822
Target:  5'- aCCGUG-UUGA--AGUACUUCGGCa- -3'
miRNA:   3'- gGGCACuAGCUucUCAUGGAGCCGag -5'
25054 3' -53.6 NC_005336.1 + 55586 0.68 0.901775
Target:  5'- gUCCGUGAUCGAgcAGAgcgugcucauGUACC-CGGUg- -3'
miRNA:   3'- -GGGCACUAGCU--UCU----------CAUGGaGCCGag -5'
25054 3' -53.6 NC_005336.1 + 103645 0.69 0.895242
Target:  5'- gCCGUGGUCGAggugcaGGAGUucuCCUCcGCg- -3'
miRNA:   3'- gGGCACUAGCU------UCUCAu--GGAGcCGag -5'
25054 3' -53.6 NC_005336.1 + 128352 0.69 0.895242
Target:  5'- aUCGUGGagcCGAAG-GUGCCguucacgCGGCUCu -3'
miRNA:   3'- gGGCACUa--GCUUCuCAUGGa------GCCGAG- -5'
25054 3' -53.6 NC_005336.1 + 38832 0.69 0.888475
Target:  5'- gCUCGcGGUCGAAGAucuccgcgGUGCggCGGCUCu -3'
miRNA:   3'- -GGGCaCUAGCUUCU--------CAUGgaGCCGAG- -5'
25054 3' -53.6 NC_005336.1 + 14973 0.69 0.856016
Target:  5'- aCCCGUGcagCGgcGAGcgccgagcgccggGCCUCgGGCUCg -3'
miRNA:   3'- -GGGCACua-GCuuCUCa------------UGGAG-CCGAG- -5'
25054 3' -53.6 NC_005336.1 + 95084 0.7 0.851267
Target:  5'- cCCUGUcuGUCGAAGAGgcCCUCGGg-- -3'
miRNA:   3'- -GGGCAc-UAGCUUCUCauGGAGCCgag -5'
25054 3' -53.6 NC_005336.1 + 64137 0.7 0.829865
Target:  5'- gCCGUGcgCGAGGGGcagcgGCUcuucgcggcgcugcgUCGGCUCu -3'
miRNA:   3'- gGGCACuaGCUUCUCa----UGG---------------AGCCGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.