miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25054 5' -59.6 NC_005336.1 + 130770 0.66 0.735417
Target:  5'- cGGGGCGCUGCucggcgGUGgUCc-GCGCcuucGCGg -3'
miRNA:   3'- aCCUCGCGACG------CACgAGaaCGCG----CGC- -5'
25054 5' -59.6 NC_005336.1 + 17245 0.66 0.735417
Target:  5'- -cGAGCGC-GCG-GCUggCgaGCGCGCGc -3'
miRNA:   3'- acCUCGCGaCGCaCGA--GaaCGCGCGC- -5'
25054 5' -59.6 NC_005336.1 + 97236 0.66 0.735417
Target:  5'- cGGuuGGcCGUgaUGCG-GCUCUgGUGCGCGg -3'
miRNA:   3'- aCC--UC-GCG--ACGCaCGAGAaCGCGCGC- -5'
25054 5' -59.6 NC_005336.1 + 123331 0.66 0.735417
Target:  5'- -cGAGCGCggcGCGUGCg--UGgGCgGCGa -3'
miRNA:   3'- acCUCGCGa--CGCACGagaACgCG-CGC- -5'
25054 5' -59.6 NC_005336.1 + 101708 0.66 0.735417
Target:  5'- -nGAGCGCUccGCGcgGCUCgcgGC-CGCGg -3'
miRNA:   3'- acCUCGCGA--CGCa-CGAGaa-CGcGCGC- -5'
25054 5' -59.6 NC_005336.1 + 60850 0.66 0.735417
Target:  5'- cGGGGCucucgGCggGCGU-CUCUgcggGCGCGCc -3'
miRNA:   3'- aCCUCG-----CGa-CGCAcGAGAa---CGCGCGc -5'
25054 5' -59.6 NC_005336.1 + 95448 0.66 0.735417
Target:  5'- cGGucGCGCgacuggucCGUGCacUCgUGCGCGCGg -3'
miRNA:   3'- aCCu-CGCGac------GCACG--AGaACGCGCGC- -5'
25054 5' -59.6 NC_005336.1 + 74866 0.66 0.735417
Target:  5'- cGGcGCGcCUGCGcUGCUg--GgGCGCGg -3'
miRNA:   3'- aCCuCGC-GACGC-ACGAgaaCgCGCGC- -5'
25054 5' -59.6 NC_005336.1 + 133121 0.66 0.729582
Target:  5'- gUGGAgauggccaagaagccGCuGCUGCGcugGUUCgagGCGCGCa -3'
miRNA:   3'- -ACCU---------------CG-CGACGCa--CGAGaa-CGCGCGc -5'
25054 5' -59.6 NC_005336.1 + 50708 0.66 0.726653
Target:  5'- aGGGGCGCgagUGCGcuucccgcgcucgcUGCUCUcgcucuucaacguggUGCcGCGCa -3'
miRNA:   3'- aCCUCGCG---ACGC--------------ACGAGA---------------ACG-CGCGc -5'
25054 5' -59.6 NC_005336.1 + 15807 0.66 0.725675
Target:  5'- cGaGAGCG--GCGUGCgUCcguccggugUGCGCGCGg -3'
miRNA:   3'- aC-CUCGCgaCGCACG-AGa--------ACGCGCGC- -5'
25054 5' -59.6 NC_005336.1 + 29213 0.66 0.725675
Target:  5'- cGGAGUGCgugcuuacgcagUGCGccgccgcgcUGCUCgccuucgccgUGCGCGCc -3'
miRNA:   3'- aCCUCGCG------------ACGC---------ACGAGa---------ACGCGCGc -5'
25054 5' -59.6 NC_005336.1 + 120237 0.66 0.725675
Target:  5'- cGGcGGCGCUGCGgcgcGCUCUU-CGC-Ca -3'
miRNA:   3'- aCC-UCGCGACGCa---CGAGAAcGCGcGc -5'
25054 5' -59.6 NC_005336.1 + 14509 0.66 0.725675
Target:  5'- aGGuAGgGCU-CGaUGUUCUcGCGCGCGu -3'
miRNA:   3'- aCC-UCgCGAcGC-ACGAGAaCGCGCGC- -5'
25054 5' -59.6 NC_005336.1 + 125995 0.66 0.715855
Target:  5'- aGGAGCug-GCG-GC-CUUcGCGCGCGu -3'
miRNA:   3'- aCCUCGcgaCGCaCGaGAA-CGCGCGC- -5'
25054 5' -59.6 NC_005336.1 + 99953 0.66 0.715855
Target:  5'- cGGAGgGC-GcCGUGCgcCUcGCGUGCGa -3'
miRNA:   3'- aCCUCgCGaC-GCACGa-GAaCGCGCGC- -5'
25054 5' -59.6 NC_005336.1 + 69480 0.66 0.714869
Target:  5'- -cGAGaCGCUGCGcgacgaggaggacUGCUCcgucgUGCGCGUc -3'
miRNA:   3'- acCUC-GCGACGC-------------ACGAGa----ACGCGCGc -5'
25054 5' -59.6 NC_005336.1 + 112890 0.66 0.705964
Target:  5'- cGGAGgucaCGCUGUGUcccgaggugacGCUgcUGCGCGUGg -3'
miRNA:   3'- aCCUC----GCGACGCA-----------CGAgaACGCGCGC- -5'
25054 5' -59.6 NC_005336.1 + 134340 0.66 0.705964
Target:  5'- cGGccGCGaaCUGCGcGCUCgcGCGCGUGg -3'
miRNA:   3'- aCCu-CGC--GACGCaCGAGaaCGCGCGC- -5'
25054 5' -59.6 NC_005336.1 + 69784 0.66 0.705964
Target:  5'- cUGGAccugugccgGCGCUcggacaaCGUGCUgcUGCGCGCGc -3'
miRNA:   3'- -ACCU---------CGCGAc------GCACGAgaACGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.