miRNA display CGI


Results 1 - 20 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25055 3' -64.9 NC_005336.1 + 126409 0.66 0.534419
Target:  5'- cCGCCggcGGGCGCgagcaGGAggucauaugcuccaGCGCGCACc -3'
miRNA:   3'- cGCGGa--CCCGCGg----CCUg-------------CGCGCGUGc -5'
25055 3' -64.9 NC_005336.1 + 78140 0.66 0.530694
Target:  5'- -gGaCCUGaacaccgacGCGuCCGG-CGCGCGCGCGg -3'
miRNA:   3'- cgC-GGACc--------CGC-GGCCuGCGCGCGUGC- -5'
25055 3' -64.9 NC_005336.1 + 18393 0.66 0.530694
Target:  5'- uCGCgaGGGCGCCGcACGUcaucgaccgaGCGCAg- -3'
miRNA:   3'- cGCGgaCCCGCGGCcUGCG----------CGCGUgc -5'
25055 3' -64.9 NC_005336.1 + 83027 0.66 0.530694
Target:  5'- -gGCCaGGcGCuGCCGG-UGCauGCGCACGa -3'
miRNA:   3'- cgCGGaCC-CG-CGGCCuGCG--CGCGUGC- -5'
25055 3' -64.9 NC_005336.1 + 116038 0.66 0.530694
Target:  5'- cGC-CCUGGGCGgUGuuCGCGCugGCGCu -3'
miRNA:   3'- -CGcGGACCCGCgGCcuGCGCG--CGUGc -5'
25055 3' -64.9 NC_005336.1 + 21484 0.66 0.530694
Target:  5'- cGCGCUucaUGGa-GgUGGcCGCGCGCGCGg -3'
miRNA:   3'- -CGCGG---ACCcgCgGCCuGCGCGCGUGC- -5'
25055 3' -64.9 NC_005336.1 + 103749 0.66 0.530694
Target:  5'- gGUGCuCUucuucGGGCGCacgcaGGACGCGCacuGCGgGa -3'
miRNA:   3'- -CGCG-GA-----CCCGCGg----CCUGCGCG---CGUgC- -5'
25055 3' -64.9 NC_005336.1 + 69633 0.66 0.530694
Target:  5'- uGUGCUUGGGCuucuuGCacaGCGCGCaGCGCGu -3'
miRNA:   3'- -CGCGGACCCG-----CGgccUGCGCG-CGUGC- -5'
25055 3' -64.9 NC_005336.1 + 89198 0.66 0.530694
Target:  5'- cGCGgCUGcGCucGCUGcucacgaccauGGCGCGCGCGCGa -3'
miRNA:   3'- -CGCgGACcCG--CGGC-----------CUGCGCGCGUGC- -5'
25055 3' -64.9 NC_005336.1 + 52102 0.66 0.530694
Target:  5'- uGCGCgaGcgaggcuucgacGGCGCgcaggcugCGGAgCGCGCGCGCu -3'
miRNA:   3'- -CGCGgaC------------CCGCG--------GCCU-GCGCGCGUGc -5'
25055 3' -64.9 NC_005336.1 + 31389 0.66 0.530694
Target:  5'- aGCGggaUGGGgaagacgcCGCCcucGGugGCGCGCugGa -3'
miRNA:   3'- -CGCgg-ACCC--------GCGG---CCugCGCGCGugC- -5'
25055 3' -64.9 NC_005336.1 + 44171 0.66 0.527907
Target:  5'- cGgGUCUGGGCGUggucgCGGACaugaucgcgugucuGCcCGCGCGg -3'
miRNA:   3'- -CgCGGACCCGCG-----GCCUG--------------CGcGCGUGC- -5'
25055 3' -64.9 NC_005336.1 + 111807 0.66 0.526978
Target:  5'- cGCGCgaGGGCaucGCggugaccguguacuCGGacaacucGCGCGCGUACGa -3'
miRNA:   3'- -CGCGgaCCCG---CG--------------GCC-------UGCGCGCGUGC- -5'
25055 3' -64.9 NC_005336.1 + 16248 0.66 0.521424
Target:  5'- aGCGCCUcGGG-GuCCGcGCcCGCGCGCa -3'
miRNA:   3'- -CGCGGA-CCCgC-GGCcUGcGCGCGUGc -5'
25055 3' -64.9 NC_005336.1 + 115005 0.66 0.521424
Target:  5'- gGCcCCUGgcGGCGCCGGAU-CGCGaACGu -3'
miRNA:   3'- -CGcGGAC--CCGCGGCCUGcGCGCgUGC- -5'
25055 3' -64.9 NC_005336.1 + 50677 0.66 0.521424
Target:  5'- uCGCacacGGGCGUgagccgcuCGGccucCGCGCGCGCGg -3'
miRNA:   3'- cGCGga--CCCGCG--------GCCu---GCGCGCGUGC- -5'
25055 3' -64.9 NC_005336.1 + 4045 0.66 0.521424
Target:  5'- gGCGag-GGGCGCC--GCGCGCGgACc -3'
miRNA:   3'- -CGCggaCCCGCGGccUGCGCGCgUGc -5'
25055 3' -64.9 NC_005336.1 + 42279 0.66 0.521424
Target:  5'- cCGCCUuucCGCCGGACGCaCGC-CGg -3'
miRNA:   3'- cGCGGAcccGCGGCCUGCGcGCGuGC- -5'
25055 3' -64.9 NC_005336.1 + 68588 0.66 0.521424
Target:  5'- cGCGCgaGuGGcCGCCGaGGagaaGUGCGUGCGg -3'
miRNA:   3'- -CGCGgaC-CC-GCGGC-CUg---CGCGCGUGC- -5'
25055 3' -64.9 NC_005336.1 + 109740 0.66 0.521424
Target:  5'- cGCGCUcacgUGcGCGCCguGGACGgccUGCGCGCa -3'
miRNA:   3'- -CGCGG----ACcCGCGG--CCUGC---GCGCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.