miRNA display CGI


Results 1 - 20 of 209 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25055 5' -53 NC_005336.1 + 99301 0.66 0.97749
Target:  5'- uCGCGCuGUccaUGCAcGCGGAcGCGCGGCu -3'
miRNA:   3'- -GCGCG-CAc--ACGUaCGCUU-UGUGCUGc -5'
25055 5' -53 NC_005336.1 + 100255 0.66 0.97749
Target:  5'- uGCGCGUGgugGaCGUgGCcAAGCugGACu -3'
miRNA:   3'- gCGCGCACa--C-GUA-CGcUUUGugCUGc -5'
25055 5' -53 NC_005336.1 + 42790 0.66 0.97749
Target:  5'- cCGCGCGUGcGCAcGCGcAGGucCGCGAa- -3'
miRNA:   3'- -GCGCGCACaCGUaCGC-UUU--GUGCUgc -5'
25055 5' -53 NC_005336.1 + 99076 0.66 0.97749
Target:  5'- -cUGCGUGUGCAagcccgacUGCGcgcucGAGCcCGGCGa -3'
miRNA:   3'- gcGCGCACACGU--------ACGC-----UUUGuGCUGC- -5'
25055 5' -53 NC_005336.1 + 125925 0.66 0.977247
Target:  5'- gGCGCG-GUGgucgcggcgccgcCGUGCGAcAC-CGACGu -3'
miRNA:   3'- gCGCGCaCAC-------------GUACGCUuUGuGCUGC- -5'
25055 5' -53 NC_005336.1 + 22497 0.66 0.976506
Target:  5'- gCGacaGCGUGuUGCGguacuuccuggacGCGAAGCugGGCa -3'
miRNA:   3'- -GCg--CGCAC-ACGUa------------CGCUUUGugCUGc -5'
25055 5' -53 NC_005336.1 + 78908 0.66 0.974973
Target:  5'- cCGCGCGcuaggccgacggUGUGC--GCGGAggugGCGCGGCc -3'
miRNA:   3'- -GCGCGC------------ACACGuaCGCUU----UGUGCUGc -5'
25055 5' -53 NC_005336.1 + 118436 0.66 0.974973
Target:  5'- gGCGCGUcgaagGC-UGCcuuGAGCACGGCGu -3'
miRNA:   3'- gCGCGCAca---CGuACGc--UUUGUGCUGC- -5'
25055 5' -53 NC_005336.1 + 124872 0.66 0.974973
Target:  5'- aGCaCGUGcGCcgGCGcccuGCGCGACa -3'
miRNA:   3'- gCGcGCACaCGuaCGCuu--UGUGCUGc -5'
25055 5' -53 NC_005336.1 + 44269 0.66 0.974973
Target:  5'- gCGCGCG-GcGCGcGCGucacGGACGCGAUGc -3'
miRNA:   3'- -GCGCGCaCaCGUaCGC----UUUGUGCUGC- -5'
25055 5' -53 NC_005336.1 + 125253 0.66 0.974973
Target:  5'- uGCGCGUGauCGUGCcGGGCGCGGa- -3'
miRNA:   3'- gCGCGCACacGUACGcUUUGUGCUgc -5'
25055 5' -53 NC_005336.1 + 109422 0.66 0.97471
Target:  5'- gCGCGCGcagcugcugagccUGcUGcCGUGCGGGcucCACGGCGa -3'
miRNA:   3'- -GCGCGC-------------AC-AC-GUACGCUUu--GUGCUGC- -5'
25055 5' -53 NC_005336.1 + 128270 0.66 0.97391
Target:  5'- gCGCGCGUGgagcGCGUGCGccgcaaguccucGCugGuCGa -3'
miRNA:   3'- -GCGCGCACa---CGUACGCuu----------UGugCuGC- -5'
25055 5' -53 NC_005336.1 + 99549 0.66 0.973367
Target:  5'- uGCGCGUGcgccGCGUG-GAGcucgagcccguggacGCGCGGCa -3'
miRNA:   3'- gCGCGCACa---CGUACgCUU---------------UGUGCUGc -5'
25055 5' -53 NC_005336.1 + 10274 0.66 0.972256
Target:  5'- gGCGCagcgGCGUGcCGAGccggcGCACGGCGu -3'
miRNA:   3'- gCGCGcacaCGUAC-GCUU-----UGUGCUGC- -5'
25055 5' -53 NC_005336.1 + 84308 0.66 0.972256
Target:  5'- cCGgGCGggaucuugaugGUGUAgccggGCGAGGCGCGuGCGg -3'
miRNA:   3'- -GCgCGCa----------CACGUa----CGCUUUGUGC-UGC- -5'
25055 5' -53 NC_005336.1 + 17704 0.66 0.972256
Target:  5'- aGCGuCGUGUuucGCAUGCacacGCGCGAgGa -3'
miRNA:   3'- gCGC-GCACA---CGUACGcuu-UGUGCUgC- -5'
25055 5' -53 NC_005336.1 + 54065 0.66 0.972256
Target:  5'- gGCGCGUGUcGCGgccgGUGucgacCACGGCc -3'
miRNA:   3'- gCGCGCACA-CGUa---CGCuuu--GUGCUGc -5'
25055 5' -53 NC_005336.1 + 136016 0.66 0.972256
Target:  5'- gGCGC-UG-GCGgccGCGGGccGCGCGGCGg -3'
miRNA:   3'- gCGCGcACaCGUa--CGCUU--UGUGCUGC- -5'
25055 5' -53 NC_005336.1 + 7109 0.66 0.972256
Target:  5'- cCGCGCGaaGUGCAcGCaGAGguGCAgCGGCGu -3'
miRNA:   3'- -GCGCGCa-CACGUaCG-CUU--UGU-GCUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.