miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25056 3' -57.5 NC_005336.1 + 81160 0.66 0.832581
Target:  5'- cGGACCaCGUguacuuGGGCAGCGCUGaGGACGc -3'
miRNA:   3'- -UUUGGcGCG------CCUGUCGCGGCaCUUGU- -5'
25056 3' -57.5 NC_005336.1 + 122520 0.66 0.832581
Target:  5'- ---aCGCaGCGGuGCGGCGC-GUGGACGc -3'
miRNA:   3'- uuugGCG-CGCC-UGUCGCGgCACUUGU- -5'
25056 3' -57.5 NC_005336.1 + 91243 0.66 0.832581
Target:  5'- -cACCGUGgucUGGAUguugAGCgcgGCCGUGAGCAg -3'
miRNA:   3'- uuUGGCGC---GCCUG----UCG---CGGCACUUGU- -5'
25056 3' -57.5 NC_005336.1 + 64719 0.66 0.832581
Target:  5'- --cCCGCGCGcGCGGCGCgGcucgcGGACGg -3'
miRNA:   3'- uuuGGCGCGCcUGUCGCGgCa----CUUGU- -5'
25056 3' -57.5 NC_005336.1 + 110106 0.66 0.832581
Target:  5'- cGugCGCGUGGaACAcGUGCCGcgaGGGCAu -3'
miRNA:   3'- uUugGCGCGCC-UGU-CGCGGCa--CUUGU- -5'
25056 3' -57.5 NC_005336.1 + 6668 0.66 0.832581
Target:  5'- -cGCCGC-CGGagcccaGCAGCGCCGccAGCGg -3'
miRNA:   3'- uuUGGCGcGCC------UGUCGCGGCacUUGU- -5'
25056 3' -57.5 NC_005336.1 + 64511 0.66 0.832581
Target:  5'- cGACUuuGUGGACAuCGUCGUGGACu -3'
miRNA:   3'- uUUGGcgCGCCUGUcGCGGCACUUGu -5'
25056 3' -57.5 NC_005336.1 + 129580 0.66 0.832581
Target:  5'- -uGCUGCGUGGGCAGCuacGCCaucUGGAUc -3'
miRNA:   3'- uuUGGCGCGCCUGUCG---CGGc--ACUUGu -5'
25056 3' -57.5 NC_005336.1 + 71671 0.66 0.832581
Target:  5'- -cGCCGCggaacccggaGCGGcGCAgccGCGCCGUGAuCGg -3'
miRNA:   3'- uuUGGCG----------CGCC-UGU---CGCGGCACUuGU- -5'
25056 3' -57.5 NC_005336.1 + 40319 0.66 0.831744
Target:  5'- --cCCGCGCaGcgcgagacauaccGCAGUGCCGcGAGCGa -3'
miRNA:   3'- uuuGGCGCGcC-------------UGUCGCGGCaCUUGU- -5'
25056 3' -57.5 NC_005336.1 + 52278 0.66 0.830064
Target:  5'- uGGACCGCGUcaaGGGCgacaucaccuacaaGGUGUCGcUGAACAc -3'
miRNA:   3'- -UUUGGCGCG---CCUG--------------UCGCGGC-ACUUGU- -5'
25056 3' -57.5 NC_005336.1 + 64934 0.66 0.824983
Target:  5'- cAGCgGCGCGGACuucgccuucauacgcGCGgCCGUGGuguaGCAa -3'
miRNA:   3'- uUUGgCGCGCCUGu--------------CGC-GGCACU----UGU- -5'
25056 3' -57.5 NC_005336.1 + 139333 0.66 0.82413
Target:  5'- gGGGCCGuCGCGGACGcGCgGCCGcccGCGg -3'
miRNA:   3'- -UUUGGC-GCGCCUGU-CG-CGGCacuUGU- -5'
25056 3' -57.5 NC_005336.1 + 93962 0.66 0.82413
Target:  5'- uGGugCGgGCGGGC-GCGCCG-GAcGCGu -3'
miRNA:   3'- -UUugGCgCGCCUGuCGCGGCaCU-UGU- -5'
25056 3' -57.5 NC_005336.1 + 61743 0.66 0.82413
Target:  5'- cAGAgCGCGCGG-CAGgGCCGau-GCGg -3'
miRNA:   3'- -UUUgGCGCGCCuGUCgCGGCacuUGU- -5'
25056 3' -57.5 NC_005336.1 + 17491 0.66 0.82413
Target:  5'- -uGCCGCagacGACGGCGCUGUGcGCGg -3'
miRNA:   3'- uuUGGCGcgc-CUGUCGCGGCACuUGU- -5'
25056 3' -57.5 NC_005336.1 + 106675 0.66 0.82413
Target:  5'- -cGCCGUGCGG-CGGgGa-GUGAGCGc -3'
miRNA:   3'- uuUGGCGCGCCuGUCgCggCACUUGU- -5'
25056 3' -57.5 NC_005336.1 + 139333 0.66 0.82413
Target:  5'- gGGGCCGuCGCGGACGcGCgGCCGcccGCGg -3'
miRNA:   3'- -UUUGGC-GCGCCUGU-CG-CGGCacuUGU- -5'
25056 3' -57.5 NC_005336.1 + 67768 0.66 0.82413
Target:  5'- uGACCGCGC--GCAGUGCCG--AGCGg -3'
miRNA:   3'- uUUGGCGCGccUGUCGCGGCacUUGU- -5'
25056 3' -57.5 NC_005336.1 + 16400 0.66 0.823275
Target:  5'- -cGCCGCGcCGGcucagaucgugcACGGCGUCGccguccaUGAGCAc -3'
miRNA:   3'- uuUGGCGC-GCC------------UGUCGCGGC-------ACUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.