miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25056 3' -57.5 NC_005336.1 + 3210 0.69 0.670927
Target:  5'- cGGCCGCGCGGc---CGCCGUGGcCGa -3'
miRNA:   3'- uUUGGCGCGCCugucGCGGCACUuGU- -5'
25056 3' -57.5 NC_005336.1 + 3210 0.69 0.670927
Target:  5'- cGGCCGCGCGGc---CGCCGUGGcCGa -3'
miRNA:   3'- uUUGGCGCGCCugucGCGGCACUuGU- -5'
25056 3' -57.5 NC_005336.1 + 3506 0.71 0.528413
Target:  5'- cGGCCGgcaGCGG-CGGCGCCGcgGGGCGg -3'
miRNA:   3'- uUUGGCg--CGCCuGUCGCGGCa-CUUGU- -5'
25056 3' -57.5 NC_005336.1 + 3506 0.71 0.528413
Target:  5'- cGGCCGgcaGCGG-CGGCGCCGcgGGGCGg -3'
miRNA:   3'- uUUGGCg--CGCCuGUCGCGGCa-CUUGU- -5'
25056 3' -57.5 NC_005336.1 + 3781 0.69 0.660693
Target:  5'- -cGCCGCGCGGcccgcggccgcCAGCGCCGcGGcCAg -3'
miRNA:   3'- uuUGGCGCGCCu----------GUCGCGGCaCUuGU- -5'
25056 3' -57.5 NC_005336.1 + 3781 0.69 0.660693
Target:  5'- -cGCCGCGCGGcccgcggccgcCAGCGCCGcGGcCAg -3'
miRNA:   3'- uuUGGCGCGCCu----------GUCGCGGCaCUuGU- -5'
25056 3' -57.5 NC_005336.1 + 3835 0.74 0.357275
Target:  5'- -cGCCGCGCGcaGCAGCGCCGccgccGAGCGc -3'
miRNA:   3'- uuUGGCGCGCc-UGUCGCGGCa----CUUGU- -5'
25056 3' -57.5 NC_005336.1 + 3835 0.74 0.357275
Target:  5'- -cGCCGCGCGcaGCAGCGCCGccgccGAGCGc -3'
miRNA:   3'- uuUGGCGCGCc-UGUCGCGGCa----CUUGU- -5'
25056 3' -57.5 NC_005336.1 + 3934 0.76 0.297771
Target:  5'- cGGGCCGcCGCGGcGCAGCGCCGcGcGCAg -3'
miRNA:   3'- -UUUGGC-GCGCC-UGUCGCGGCaCuUGU- -5'
25056 3' -57.5 NC_005336.1 + 4058 0.68 0.688247
Target:  5'- ---gCGCGCGGACcaAGUGCUccacgagcagggugGUGAGCAg -3'
miRNA:   3'- uuugGCGCGCCUG--UCGCGG--------------CACUUGU- -5'
25056 3' -57.5 NC_005336.1 + 5642 0.67 0.749926
Target:  5'- cAGCuCGCGCGcGACGGCgagccuguccgcgGCCGgGAGCGc -3'
miRNA:   3'- uUUG-GCGCGC-CUGUCG-------------CGGCaCUUGU- -5'
25056 3' -57.5 NC_005336.1 + 5828 0.67 0.779399
Target:  5'- -cGCCGCGCGcGCGGCcaGCCG-GcGCAg -3'
miRNA:   3'- uuUGGCGCGCcUGUCG--CGGCaCuUGU- -5'
25056 3' -57.5 NC_005336.1 + 6366 0.76 0.271025
Target:  5'- -cGCCGCGCGGuGCAGCGCgGUcuGCAg -3'
miRNA:   3'- uuUGGCGCGCC-UGUCGCGgCAcuUGU- -5'
25056 3' -57.5 NC_005336.1 + 6668 0.66 0.832581
Target:  5'- -cGCCGC-CGGagcccaGCAGCGCCGccAGCGg -3'
miRNA:   3'- uuUGGCGcGCC------UGUCGCGGCacUUGU- -5'
25056 3' -57.5 NC_005336.1 + 6855 0.67 0.779399
Target:  5'- cAGCCGCGCGaccucgagcuCGGUGCCGUcgGAGCc -3'
miRNA:   3'- uUUGGCGCGCcu--------GUCGCGGCA--CUUGu -5'
25056 3' -57.5 NC_005336.1 + 8952 0.7 0.572576
Target:  5'- aAGGCCGCcgugGCGuGGCAGUccacgcgcugaugagGCCGUGGACGg -3'
miRNA:   3'- -UUUGGCG----CGC-CUGUCG---------------CGGCACUUGU- -5'
25056 3' -57.5 NC_005336.1 + 9896 0.66 0.815503
Target:  5'- cGGgCGCGCGGACugaaAGUGCUgGUGcAGCAg -3'
miRNA:   3'- uUUgGCGCGCCUG----UCGCGG-CAC-UUGU- -5'
25056 3' -57.5 NC_005336.1 + 11546 0.69 0.619609
Target:  5'- -cACgCGCGCGGcCAGCGCCGcgcgGuaGACAc -3'
miRNA:   3'- uuUG-GCGCGCCuGUCGCGGCa---C--UUGU- -5'
25056 3' -57.5 NC_005336.1 + 11859 0.71 0.528413
Target:  5'- --uCCgGCGCcaaGGGCAGCGCUGUGcGCAc -3'
miRNA:   3'- uuuGG-CGCG---CCUGUCGCGGCACuUGU- -5'
25056 3' -57.5 NC_005336.1 + 12207 0.69 0.650436
Target:  5'- aGGACuCGCaGUGGuaguGCAGCGCCGUGcGCc -3'
miRNA:   3'- -UUUG-GCG-CGCC----UGUCGCGGCACuUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.