miRNA display CGI


Results 1 - 20 of 395 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25056 5' -55.8 NC_005336.1 + 48224 0.66 0.911993
Target:  5'- aACGC--UCGGCGUguuggCGCuGUGCGUGGUg -3'
miRNA:   3'- gUGCGgaAGCUGUA-----GCG-CGCGUACCG- -5'
25056 5' -55.8 NC_005336.1 + 134007 0.66 0.911993
Target:  5'- -cCGCCU---GCGcCGUGCGCGUGGg -3'
miRNA:   3'- guGCGGAagcUGUaGCGCGCGUACCg -5'
25056 5' -55.8 NC_005336.1 + 62210 0.66 0.911993
Target:  5'- --gGCCUUCGcCAgcCGCGUGUAcgaGGCg -3'
miRNA:   3'- gugCGGAAGCuGUa-GCGCGCGUa--CCG- -5'
25056 5' -55.8 NC_005336.1 + 98192 0.66 0.911993
Target:  5'- uGCGCag-CGGC-UCGUGgCGC-UGGCg -3'
miRNA:   3'- gUGCGgaaGCUGuAGCGC-GCGuACCG- -5'
25056 5' -55.8 NC_005336.1 + 77585 0.66 0.911993
Target:  5'- aGCGCC-UCGuACA-CGCG-GC-UGGCg -3'
miRNA:   3'- gUGCGGaAGC-UGUaGCGCgCGuACCG- -5'
25056 5' -55.8 NC_005336.1 + 88475 0.66 0.911993
Target:  5'- gACGUCagcgUgGACGcgaCGCGCGCG-GGCg -3'
miRNA:   3'- gUGCGGa---AgCUGUa--GCGCGCGUaCCG- -5'
25056 5' -55.8 NC_005336.1 + 45029 0.66 0.911993
Target:  5'- aCGCgGCCUUCGAgcUCGUGgGCAcgcccuacGGCu -3'
miRNA:   3'- -GUG-CGGAAGCUguAGCGCgCGUa-------CCG- -5'
25056 5' -55.8 NC_005336.1 + 109751 0.66 0.911993
Target:  5'- gCGCGCCgUgGACGgccUGCGCGCAgcucaGCu -3'
miRNA:   3'- -GUGCGGaAgCUGUa--GCGCGCGUac---CG- -5'
25056 5' -55.8 NC_005336.1 + 130855 0.66 0.911993
Target:  5'- cCACGCCacggCGGCcuUCGUGCuccgGCAcGGCu -3'
miRNA:   3'- -GUGCGGaa--GCUGu-AGCGCG----CGUaCCG- -5'
25056 5' -55.8 NC_005336.1 + 86266 0.66 0.911993
Target:  5'- aGCGCC---GGCG-CGCGCGCGgaguccGGCu -3'
miRNA:   3'- gUGCGGaagCUGUaGCGCGCGUa-----CCG- -5'
25056 5' -55.8 NC_005336.1 + 46854 0.66 0.911993
Target:  5'- aCGCGCUugUUCaGCucgcUCGCGCGC--GGCg -3'
miRNA:   3'- -GUGCGG--AAGcUGu---AGCGCGCGuaCCG- -5'
25056 5' -55.8 NC_005336.1 + 36548 0.66 0.911993
Target:  5'- gCGCGCCgcugggCGugagccGCGUCGCGgGCuUGcGCa -3'
miRNA:   3'- -GUGCGGaa----GC------UGUAGCGCgCGuAC-CG- -5'
25056 5' -55.8 NC_005336.1 + 74564 0.66 0.911993
Target:  5'- gCGCGCCgcugucCGGagaGUCGC-CGC-UGGCg -3'
miRNA:   3'- -GUGCGGaa----GCUg--UAGCGcGCGuACCG- -5'
25056 5' -55.8 NC_005336.1 + 64948 0.66 0.911993
Target:  5'- -uCGCCUUC-AUA-CGCGCGgcCGUGGUg -3'
miRNA:   3'- guGCGGAAGcUGUaGCGCGC--GUACCG- -5'
25056 5' -55.8 NC_005336.1 + 97943 0.66 0.911993
Target:  5'- gACGCC--CGAgGUcaCGCGCGCAcUGcGCg -3'
miRNA:   3'- gUGCGGaaGCUgUA--GCGCGCGU-AC-CG- -5'
25056 5' -55.8 NC_005336.1 + 69009 0.66 0.911394
Target:  5'- -cCGUCUUCGuggcgccGCAgagCGCGCuggaCAUGGCg -3'
miRNA:   3'- guGCGGAAGC-------UGUa--GCGCGc---GUACCG- -5'
25056 5' -55.8 NC_005336.1 + 94894 0.66 0.910793
Target:  5'- gCGCGCCguaaggcgcuaUGGCGUCuauCGCGCAgGGCu -3'
miRNA:   3'- -GUGCGGaa---------GCUGUAGc--GCGCGUaCCG- -5'
25056 5' -55.8 NC_005336.1 + 133553 0.66 0.910189
Target:  5'- uGCGCCgcaacaacgugcgugCGACGgccgccgugcUCGCGCGCc-GGCc -3'
miRNA:   3'- gUGCGGaa-------------GCUGU----------AGCGCGCGuaCCG- -5'
25056 5' -55.8 NC_005336.1 + 81360 0.66 0.908364
Target:  5'- gCGCGCC-UCGAggccgagaagaagccCAcgcUCGUGCacuGCGUGGCc -3'
miRNA:   3'- -GUGCGGaAGCU---------------GU---AGCGCG---CGUACCG- -5'
25056 5' -55.8 NC_005336.1 + 73389 0.66 0.905897
Target:  5'- gAgGCCguccUCGGCA-CGCGCGa--GGCa -3'
miRNA:   3'- gUgCGGa---AGCUGUaGCGCGCguaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.