miRNA display CGI


Results 1 - 20 of 395 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25056 5' -55.8 NC_005336.1 + 39610 0.66 0.886203
Target:  5'- gACGgCUUCGGCAUCagccucuCGCGC-UGGa -3'
miRNA:   3'- gUGCgGAAGCUGUAGc------GCGCGuACCg -5'
25056 5' -55.8 NC_005336.1 + 49916 0.66 0.893
Target:  5'- aAgGCCgu-GGCGUCGCugaugGCGCAggGGCg -3'
miRNA:   3'- gUgCGGaagCUGUAGCG-----CGCGUa-CCG- -5'
25056 5' -55.8 NC_005336.1 + 34446 0.66 0.890308
Target:  5'- aCACGUCUgcUCGcccucgagaccgaGCAcggucagcgagcacUCGCGCGgCAUGGUg -3'
miRNA:   3'- -GUGCGGA--AGC-------------UGU--------------AGCGCGC-GUACCG- -5'
25056 5' -55.8 NC_005336.1 + 124609 0.66 0.885511
Target:  5'- -cCGCCggacaaCGACugCGCGCGCcagggccGUGGCg -3'
miRNA:   3'- guGCGGaa----GCUGuaGCGCGCG-------UACCG- -5'
25056 5' -55.8 NC_005336.1 + 76766 0.66 0.886203
Target:  5'- uGCGCCgcagcgcguagUCGAUGUaggcagcgUGCGCGCuggucAUGGCg -3'
miRNA:   3'- gUGCGGa----------AGCUGUA--------GCGCGCG-----UACCG- -5'
25056 5' -55.8 NC_005336.1 + 15049 0.66 0.886203
Target:  5'- -nCGCCgcgCGAag-UGCGCcuGCAUGGCc -3'
miRNA:   3'- guGCGGaa-GCUguaGCGCG--CGUACCG- -5'
25056 5' -55.8 NC_005336.1 + 41957 0.66 0.899565
Target:  5'- uGCGCUgUCGcCAcgCGCGCGCGUccGCg -3'
miRNA:   3'- gUGCGGaAGCuGUa-GCGCGCGUAc-CG- -5'
25056 5' -55.8 NC_005336.1 + 3901 0.66 0.899565
Target:  5'- cCGCGCCagcagcagCGGCAgcCGCGCGUccagcgGGCc -3'
miRNA:   3'- -GUGCGGaa------GCUGUa-GCGCGCGua----CCG- -5'
25056 5' -55.8 NC_005336.1 + 81685 0.66 0.893
Target:  5'- aCugGCCgUCGccgcucuccugcGCGaaggCGuUGCGCAUGGCg -3'
miRNA:   3'- -GugCGGaAGC------------UGUa---GC-GCGCGUACCG- -5'
25056 5' -55.8 NC_005336.1 + 42611 0.66 0.893
Target:  5'- gAgGCCUguguggaCGGCGugcUCGCGCGC--GGCg -3'
miRNA:   3'- gUgCGGAa------GCUGU---AGCGCGCGuaCCG- -5'
25056 5' -55.8 NC_005336.1 + 29769 0.66 0.893
Target:  5'- uCGCGCCcUCGcGCAcCGCcuGCGCGaacucgcggcUGGCa -3'
miRNA:   3'- -GUGCGGaAGC-UGUaGCG--CGCGU----------ACCG- -5'
25056 5' -55.8 NC_005336.1 + 102999 0.66 0.893
Target:  5'- cCACGCCUUCG-CggCGCuGCuCAgcGGCa -3'
miRNA:   3'- -GUGCGGAAGCuGuaGCG-CGcGUa-CCG- -5'
25056 5' -55.8 NC_005336.1 + 47674 0.66 0.893
Target:  5'- uGCGCCgccggcagcgUCGACGcggacuUCuGCGCGCAcUGGa -3'
miRNA:   3'- gUGCGGa---------AGCUGU------AG-CGCGCGU-ACCg -5'
25056 5' -55.8 NC_005336.1 + 81300 0.66 0.893
Target:  5'- --aGCCcgCGAgCGcgCGCGCGCGcccUGGCu -3'
miRNA:   3'- gugCGGaaGCU-GUa-GCGCGCGU---ACCG- -5'
25056 5' -55.8 NC_005336.1 + 40237 0.66 0.886203
Target:  5'- gCAgGCCa-CGACGUCGUaGCGCGUGu- -3'
miRNA:   3'- -GUgCGGaaGCUGUAGCG-CGCGUACcg -5'
25056 5' -55.8 NC_005336.1 + 125470 0.66 0.899565
Target:  5'- cCugGCCUcgcugCGAUGggugCGCGUGCGUG-Cg -3'
miRNA:   3'- -GugCGGAa----GCUGUa---GCGCGCGUACcG- -5'
25056 5' -55.8 NC_005336.1 + 16859 0.66 0.899565
Target:  5'- cCACGagcagcgUgGGCAgcgCGCGCaGCGUGGCc -3'
miRNA:   3'- -GUGCgga----AgCUGUa--GCGCG-CGUACCG- -5'
25056 5' -55.8 NC_005336.1 + 102530 0.66 0.893
Target:  5'- gCGCGCaaccucugCUUCGACAUgcCGCccgaggccGCGCAccUGGCc -3'
miRNA:   3'- -GUGCG--------GAAGCUGUA--GCG--------CGCGU--ACCG- -5'
25056 5' -55.8 NC_005336.1 + 15121 0.66 0.893
Target:  5'- gCugGCCgcggaCGGC-UCGCGCGgGUGcaGCa -3'
miRNA:   3'- -GugCGGaa---GCUGuAGCGCGCgUAC--CG- -5'
25056 5' -55.8 NC_005336.1 + 16752 0.66 0.899565
Target:  5'- gCGCGCCUugUCGAaGUUGCuCGCGaGGUc -3'
miRNA:   3'- -GUGCGGA--AGCUgUAGCGcGCGUaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.