miRNA display CGI


Results 1 - 20 of 395 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25056 5' -55.8 NC_005336.1 + 115345 0.75 0.442631
Target:  5'- uGCGCCUUCGACAUCaCGCcgGUGGa -3'
miRNA:   3'- gUGCGGAAGCUGUAGcGCGcgUACCg -5'
25056 5' -55.8 NC_005336.1 + 100870 0.77 0.357275
Target:  5'- aCGCgGCCUUCG-CGgcgCGCGCGCGgucGGCg -3'
miRNA:   3'- -GUG-CGGAAGCuGUa--GCGCGCGUa--CCG- -5'
25056 5' -55.8 NC_005336.1 + 126682 0.76 0.373398
Target:  5'- gGCGCCUggcugcaGGCcGUCGCGCGCGUgcacGGCa -3'
miRNA:   3'- gUGCGGAag-----CUG-UAGCGCGCGUA----CCG- -5'
25056 5' -55.8 NC_005336.1 + 101406 0.76 0.384974
Target:  5'- aACGCCUgcuucgCGGCGguggcggacgcggcCGCGCGCGUGGUc -3'
miRNA:   3'- gUGCGGAa-----GCUGUa-------------GCGCGCGUACCG- -5'
25056 5' -55.8 NC_005336.1 + 71556 0.75 0.41581
Target:  5'- cCGCGCaCUUCaACGUgCGCGUGCAcGGCg -3'
miRNA:   3'- -GUGCG-GAAGcUGUA-GCGCGCGUaCCG- -5'
25056 5' -55.8 NC_005336.1 + 72250 0.75 0.42464
Target:  5'- gACGUCggCGACAUCGUGgUGCAgGGCa -3'
miRNA:   3'- gUGCGGaaGCUGUAGCGC-GCGUaCCG- -5'
25056 5' -55.8 NC_005336.1 + 52070 0.75 0.42464
Target:  5'- gCGCGCCUUCGugGaCGCG-GCAcuggGGCu -3'
miRNA:   3'- -GUGCGGAAGCugUaGCGCgCGUa---CCG- -5'
25056 5' -55.8 NC_005336.1 + 88939 0.75 0.42464
Target:  5'- gAgGCCUUCGACGUC-CGCGCcgagagcgGGCu -3'
miRNA:   3'- gUgCGGAAGCUGUAGcGCGCGua------CCG- -5'
25056 5' -55.8 NC_005336.1 + 48200 0.75 0.433582
Target:  5'- gCGCGCCUUCGAg--C-CGCGCGUGGa -3'
miRNA:   3'- -GUGCGGAAGCUguaGcGCGCGUACCg -5'
25056 5' -55.8 NC_005336.1 + 3861 0.77 0.357275
Target:  5'- aGCGCCcgCGcGCGUCGCGCGCcgaGGCc -3'
miRNA:   3'- gUGCGGaaGC-UGUAGCGCGCGua-CCG- -5'
25056 5' -55.8 NC_005336.1 + 12770 0.77 0.357275
Target:  5'- uCGCGCUccugcgCGACGUCuCGCGCGUGGUc -3'
miRNA:   3'- -GUGCGGaa----GCUGUAGcGCGCGUACCG- -5'
25056 5' -55.8 NC_005336.1 + 83630 0.77 0.326519
Target:  5'- -uUGCCgucUCGAUGUCGCGCGUAaGGCu -3'
miRNA:   3'- guGCGGa--AGCUGUAGCGCGCGUaCCG- -5'
25056 5' -55.8 NC_005336.1 + 133589 0.83 0.149274
Target:  5'- aACGaCUUCGACuUCGCGCGUGUGGCc -3'
miRNA:   3'- gUGCgGAAGCUGuAGCGCGCGUACCG- -5'
25056 5' -55.8 NC_005336.1 + 57637 0.81 0.207427
Target:  5'- gACGaCUUCGACGcCGCGCGCAaGGCg -3'
miRNA:   3'- gUGCgGAAGCUGUaGCGCGCGUaCCG- -5'
25056 5' -55.8 NC_005336.1 + 32504 0.79 0.277526
Target:  5'- cCGCGCC-UCGACAUCGUGaaguCGCGgagGGCg -3'
miRNA:   3'- -GUGCGGaAGCUGUAGCGC----GCGUa--CCG- -5'
25056 5' -55.8 NC_005336.1 + 100775 0.79 0.277526
Target:  5'- cCACGCgCUUCGAggagGUCGCGCGCcggGGCu -3'
miRNA:   3'- -GUGCG-GAAGCUg---UAGCGCGCGua-CCG- -5'
25056 5' -55.8 NC_005336.1 + 5960 0.78 0.297771
Target:  5'- aGCGCCUUCG-CGUCGUGCGCcgcGCg -3'
miRNA:   3'- gUGCGGAAGCuGUAGCGCGCGuacCG- -5'
25056 5' -55.8 NC_005336.1 + 44913 0.78 0.297771
Target:  5'- aGCGCCUU--ACggCGCGCGCGUGGUc -3'
miRNA:   3'- gUGCGGAAgcUGuaGCGCGCGUACCG- -5'
25056 5' -55.8 NC_005336.1 + 99531 0.78 0.311894
Target:  5'- gCGCGCC-UCGAUgcuUCGUGCGCGUGcGCc -3'
miRNA:   3'- -GUGCGGaAGCUGu--AGCGCGCGUAC-CG- -5'
25056 5' -55.8 NC_005336.1 + 68364 0.77 0.319144
Target:  5'- -cCGCCUUCGACG-CGCGgGCGccGGCg -3'
miRNA:   3'- guGCGGAAGCUGUaGCGCgCGUa-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.