Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25057 | 3' | -57.1 | NC_005336.1 | + | 101694 | 0.66 | 0.853122 |
Target: 5'- cUCGCGgccaugcgcgagcgcUCCGcgcGGCUCGCGGccgcgGACg -3' miRNA: 3'- aAGCGCaa-------------AGGC---CCGAGCGCCua---CUG- -5' |
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25057 | 3' | -57.1 | NC_005336.1 | + | 65626 | 0.66 | 0.847558 |
Target: 5'- uUUCgGCGg--CgGGGCUCGCGGgcGuCu -3' miRNA: 3'- -AAG-CGCaaaGgCCCGAGCGCCuaCuG- -5' |
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25057 | 3' | -57.1 | NC_005336.1 | + | 66529 | 0.66 | 0.847558 |
Target: 5'- -cUGCGggUgCGGGCgCGCGGAguACg -3' miRNA: 3'- aaGCGCaaAgGCCCGaGCGCCUacUG- -5' |
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25057 | 3' | -57.1 | NC_005336.1 | + | 41914 | 0.66 | 0.839443 |
Target: 5'- cUCGCGccga-GGcGCUCGCGGAgcgcGGCg -3' miRNA: 3'- aAGCGCaaaggCC-CGAGCGCCUa---CUG- -5' |
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25057 | 3' | -57.1 | NC_005336.1 | + | 62496 | 0.66 | 0.831138 |
Target: 5'- cUCGCcca-CCGagaGGCUCGCGG-UGGCg -3' miRNA: 3'- aAGCGcaaaGGC---CCGAGCGCCuACUG- -5' |
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25057 | 3' | -57.1 | NC_005336.1 | + | 53681 | 0.66 | 0.82265 |
Target: 5'- -cCGCGgcaCCGGGCUCuGCGug-GACu -3' miRNA: 3'- aaGCGCaaaGGCCCGAG-CGCcuaCUG- -5' |
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25057 | 3' | -57.1 | NC_005336.1 | + | 70658 | 0.66 | 0.82265 |
Target: 5'- cUCGCGcgaggagUUCGcGGC-CGCGGcgGACu -3' miRNA: 3'- aAGCGCaa-----AGGC-CCGaGCGCCuaCUG- -5' |
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25057 | 3' | -57.1 | NC_005336.1 | + | 77739 | 0.66 | 0.813987 |
Target: 5'- -cCGCGcg-CCGcGGCUCGCuGGcgaccAUGACg -3' miRNA: 3'- aaGCGCaaaGGC-CCGAGCG-CC-----UACUG- -5' |
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25057 | 3' | -57.1 | NC_005336.1 | + | 33291 | 0.67 | 0.777753 |
Target: 5'- --aGCGg-UCCaGGCUCGCGGAgaGCg -3' miRNA: 3'- aagCGCaaAGGcCCGAGCGCCUacUG- -5' |
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25057 | 3' | -57.1 | NC_005336.1 | + | 96284 | 0.67 | 0.768342 |
Target: 5'- -cCGCGUacaCCGGGCagGCGGGcgcGGCg -3' miRNA: 3'- aaGCGCAaa-GGCCCGagCGCCUa--CUG- -5' |
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25057 | 3' | -57.1 | NC_005336.1 | + | 83199 | 0.68 | 0.72957 |
Target: 5'- -gCGCGag-CCaGGGCgCGCGGAcGACg -3' miRNA: 3'- aaGCGCaaaGG-CCCGaGCGCCUaCUG- -5' |
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25057 | 3' | -57.1 | NC_005336.1 | + | 5407 | 0.68 | 0.719641 |
Target: 5'- -cCGCGaugCCGugccGGCUCGCGGGcacgUGGCg -3' miRNA: 3'- aaGCGCaaaGGC----CCGAGCGCCU----ACUG- -5' |
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25057 | 3' | -57.1 | NC_005336.1 | + | 64726 | 0.68 | 0.719641 |
Target: 5'- -gCGCGg---CGcGGCUCGCGGAcgGGCa -3' miRNA: 3'- aaGCGCaaagGC-CCGAGCGCCUa-CUG- -5' |
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25057 | 3' | -57.1 | NC_005336.1 | + | 51832 | 0.68 | 0.710639 |
Target: 5'- -aCGCGUgcaacuuccugguggUCUGGGUggcgcgCGCGGcgGACa -3' miRNA: 3'- aaGCGCAa--------------AGGCCCGa-----GCGCCuaCUG- -5' |
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25057 | 3' | -57.1 | NC_005336.1 | + | 38738 | 0.69 | 0.699564 |
Target: 5'- -cCGCGcaccuaCGGGCUCGUGG-UGGCc -3' miRNA: 3'- aaGCGCaaag--GCCCGAGCGCCuACUG- -5' |
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25057 | 3' | -57.1 | NC_005336.1 | + | 101480 | 0.69 | 0.669042 |
Target: 5'- --gGCGgugCgCGGGCUCGCGGAcuGCu -3' miRNA: 3'- aagCGCaaaG-GCCCGAGCGCCUacUG- -5' |
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25057 | 3' | -57.1 | NC_005336.1 | + | 21508 | 0.69 | 0.648529 |
Target: 5'- -gCGCGg--CCGaGCUCGCGGAggucauUGGCg -3' miRNA: 3'- aaGCGCaaaGGCcCGAGCGCCU------ACUG- -5' |
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25057 | 3' | -57.1 | NC_005336.1 | + | 60842 | 0.7 | 0.617679 |
Target: 5'- -gCGCGcgUCgGGGCUCuCGGcgGGCg -3' miRNA: 3'- aaGCGCaaAGgCCCGAGcGCCuaCUG- -5' |
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25057 | 3' | -57.1 | NC_005336.1 | + | 121189 | 0.7 | 0.613569 |
Target: 5'- cUCGUGgauaaacgaccgUCCGGaGCUCGCGGAgGAg -3' miRNA: 3'- aAGCGCaa----------AGGCC-CGAGCGCCUaCUg -5' |
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25057 | 3' | -57.1 | NC_005336.1 | + | 75229 | 0.71 | 0.566581 |
Target: 5'- -cUGCGUgaacugCCGGGacuugUCGCGGAUGAg -3' miRNA: 3'- aaGCGCAaa----GGCCCg----AGCGCCUACUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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