miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25057 3' -57.1 NC_005336.1 + 121237 0.96 0.015649
Target:  5'- gUUCGCGUUcUCGGGCUCGCGGAUGACg -3'
miRNA:   3'- -AAGCGCAAaGGCCCGAGCGCCUACUG- -5'
25057 3' -57.1 NC_005336.1 + 100792 0.76 0.296294
Target:  5'- gUCGCGcg-CCgGGGCUCGCGGAcgcgcUGGCc -3'
miRNA:   3'- aAGCGCaaaGG-CCCGAGCGCCU-----ACUG- -5'
25057 3' -57.1 NC_005336.1 + 19817 0.76 0.296294
Target:  5'- aUCGCGUgUuuGGGCuuUCGCGGAaGGCg -3'
miRNA:   3'- aAGCGCAaAggCCCG--AGCGCCUaCUG- -5'
25057 3' -57.1 NC_005336.1 + 101321 0.72 0.487512
Target:  5'- -cCGCGag-CgCGGGCUCGCGGAccucgcgGACa -3'
miRNA:   3'- aaGCGCaaaG-GCCCGAGCGCCUa------CUG- -5'
25057 3' -57.1 NC_005336.1 + 73166 0.72 0.487512
Target:  5'- --gGCGUgUCCGGGUUCagGCGGAaGGCg -3'
miRNA:   3'- aagCGCAaAGGCCCGAG--CGCCUaCUG- -5'
25057 3' -57.1 NC_005336.1 + 52018 0.71 0.546418
Target:  5'- -gCGCGagUCCGGGCUCcGCGcGAUcGCg -3'
miRNA:   3'- aaGCGCaaAGGCCCGAG-CGC-CUAcUG- -5'
25057 3' -57.1 NC_005336.1 + 75229 0.71 0.566581
Target:  5'- -cUGCGUgaacugCCGGGacuugUCGCGGAUGAg -3'
miRNA:   3'- aaGCGCAaa----GGCCCg----AGCGCCUACUg -5'
25057 3' -57.1 NC_005336.1 + 121515 0.71 0.566581
Target:  5'- -aCGCGgugCCGGGCcugCGCGGGUacgcGACc -3'
miRNA:   3'- aaGCGCaaaGGCCCGa--GCGCCUA----CUG- -5'
25057 3' -57.1 NC_005336.1 + 133926 0.71 0.566581
Target:  5'- -cCGCGgcgCCGGGCUCGCuGuacGACg -3'
miRNA:   3'- aaGCGCaaaGGCCCGAGCGcCua-CUG- -5'
25057 3' -57.1 NC_005336.1 + 121189 0.7 0.613569
Target:  5'- cUCGUGgauaaacgaccgUCCGGaGCUCGCGGAgGAg -3'
miRNA:   3'- aAGCGCaa----------AGGCC-CGAGCGCCUaCUg -5'
25057 3' -57.1 NC_005336.1 + 60842 0.7 0.617679
Target:  5'- -gCGCGcgUCgGGGCUCuCGGcgGGCg -3'
miRNA:   3'- aaGCGCaaAGgCCCGAGcGCCuaCUG- -5'
25057 3' -57.1 NC_005336.1 + 21508 0.69 0.648529
Target:  5'- -gCGCGg--CCGaGCUCGCGGAggucauUGGCg -3'
miRNA:   3'- aaGCGCaaaGGCcCGAGCGCCU------ACUG- -5'
25057 3' -57.1 NC_005336.1 + 101480 0.69 0.669042
Target:  5'- --gGCGgugCgCGGGCUCGCGGAcuGCu -3'
miRNA:   3'- aagCGCaaaG-GCCCGAGCGCCUacUG- -5'
25057 3' -57.1 NC_005336.1 + 38738 0.69 0.699564
Target:  5'- -cCGCGcaccuaCGGGCUCGUGG-UGGCc -3'
miRNA:   3'- aaGCGCaaag--GCCCGAGCGCCuACUG- -5'
25057 3' -57.1 NC_005336.1 + 51832 0.68 0.710639
Target:  5'- -aCGCGUgcaacuuccugguggUCUGGGUggcgcgCGCGGcgGACa -3'
miRNA:   3'- aaGCGCAa--------------AGGCCCGa-----GCGCCuaCUG- -5'
25057 3' -57.1 NC_005336.1 + 5407 0.68 0.719641
Target:  5'- -cCGCGaugCCGugccGGCUCGCGGGcacgUGGCg -3'
miRNA:   3'- aaGCGCaaaGGC----CCGAGCGCCU----ACUG- -5'
25057 3' -57.1 NC_005336.1 + 64726 0.68 0.719641
Target:  5'- -gCGCGg---CGcGGCUCGCGGAcgGGCa -3'
miRNA:   3'- aaGCGCaaagGC-CCGAGCGCCUa-CUG- -5'
25057 3' -57.1 NC_005336.1 + 83199 0.68 0.72957
Target:  5'- -gCGCGag-CCaGGGCgCGCGGAcGACg -3'
miRNA:   3'- aaGCGCaaaGG-CCCGaGCGCCUaCUG- -5'
25057 3' -57.1 NC_005336.1 + 96284 0.67 0.768342
Target:  5'- -cCGCGUacaCCGGGCagGCGGGcgcGGCg -3'
miRNA:   3'- aaGCGCAaa-GGCCCGagCGCCUa--CUG- -5'
25057 3' -57.1 NC_005336.1 + 33291 0.67 0.777753
Target:  5'- --aGCGg-UCCaGGCUCGCGGAgaGCg -3'
miRNA:   3'- aagCGCaaAGGcCCGAGCGCCUacUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.