miRNA display CGI


Results 1 - 20 of 380 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25057 5' -56.5 NC_005336.1 + 83026 0.66 0.883877
Target:  5'- uGGCcAgGCGCU---GCCGGugcauGCGCACg -3'
miRNA:   3'- gCCGaUgCGCGAcuuCGGCU-----UGCGUG- -5'
25057 5' -56.5 NC_005336.1 + 114314 0.66 0.883877
Target:  5'- gCGGC-ACGCgGCUGucGCUGGcgGCgGCGCc -3'
miRNA:   3'- -GCCGaUGCG-CGACuuCGGCU--UG-CGUG- -5'
25057 5' -56.5 NC_005336.1 + 45697 0.66 0.883877
Target:  5'- cCGGC--CGCGaacuccGAGGCCGcgUGCACg -3'
miRNA:   3'- -GCCGauGCGCga----CUUCGGCuuGCGUG- -5'
25057 5' -56.5 NC_005336.1 + 68125 0.66 0.883877
Target:  5'- gCGGCUGCGcCGCUccggguuccgcGgcGCCgcGAACGCc- -3'
miRNA:   3'- -GCCGAUGC-GCGA-----------CuuCGG--CUUGCGug -5'
25057 5' -56.5 NC_005336.1 + 32248 0.66 0.883877
Target:  5'- gCGGUgguuccgcacCGCGCgGAAGCCGGuguucaucgGCGCGa -3'
miRNA:   3'- -GCCGau--------GCGCGaCUUCGGCU---------UGCGUg -5'
25057 5' -56.5 NC_005336.1 + 33299 0.66 0.883877
Target:  5'- aGGCU-CGCGgaGAGcGCgGAGacuaGCGCg -3'
miRNA:   3'- gCCGAuGCGCgaCUU-CGgCUUg---CGUG- -5'
25057 5' -56.5 NC_005336.1 + 31737 0.66 0.883877
Target:  5'- uCGGUgGCGUcgauGCUGAGcCCGAgGCGCAUg -3'
miRNA:   3'- -GCCGaUGCG----CGACUUcGGCU-UGCGUG- -5'
25057 5' -56.5 NC_005336.1 + 70882 0.66 0.883877
Target:  5'- cCGGUcgUGCGCGCgaccGAGCucgCGAuCGCGCg -3'
miRNA:   3'- -GCCG--AUGCGCGac--UUCG---GCUuGCGUG- -5'
25057 5' -56.5 NC_005336.1 + 134367 0.66 0.883877
Target:  5'- uGGCgacCGCGCUGAcGCgccacgugcccgCGAGCcgGCACg -3'
miRNA:   3'- gCCGau-GCGCGACUuCG------------GCUUG--CGUG- -5'
25057 5' -56.5 NC_005336.1 + 47695 0.66 0.883176
Target:  5'- gCGGacuuCUGCGCGCacugGAucaacgcGGCCGugacgcGGCGCACg -3'
miRNA:   3'- -GCC----GAUGCGCGa---CU-------UCGGC------UUGCGUG- -5'
25057 5' -56.5 NC_005336.1 + 94851 0.66 0.883176
Target:  5'- aCGGCUACGCaGCuccgcagcagcucUGAgAGCagGAccACGCGCg -3'
miRNA:   3'- -GCCGAUGCG-CG-------------ACU-UCGg-CU--UGCGUG- -5'
25057 5' -56.5 NC_005336.1 + 75557 0.66 0.881768
Target:  5'- uCGcGCgUGCGCgaggagaacuccacGCUGGAgacGCCGAAgGCGCg -3'
miRNA:   3'- -GC-CG-AUGCG--------------CGACUU---CGGCUUgCGUG- -5'
25057 5' -56.5 NC_005336.1 + 118975 0.66 0.879639
Target:  5'- cCGGCUcucguacaagaacaaGCGCaGcCUGGAGgUGGACGCGa -3'
miRNA:   3'- -GCCGA---------------UGCG-C-GACUUCgGCUUGCGUg -5'
25057 5' -56.5 NC_005336.1 + 108660 0.66 0.879639
Target:  5'- aCGGCUGCacggaacacaagcucGUGCUGGuggAGUCGGACGgGu -3'
miRNA:   3'- -GCCGAUG---------------CGCGACU---UCGGCUUGCgUg -5'
25057 5' -56.5 NC_005336.1 + 67645 0.66 0.876769
Target:  5'- gCGGCU-CGCGC----GCCGcGCGCAa -3'
miRNA:   3'- -GCCGAuGCGCGacuuCGGCuUGCGUg -5'
25057 5' -56.5 NC_005336.1 + 31828 0.66 0.876769
Target:  5'- cCGGCUgcACGCGCcaGAGGuuGGuguACGCu- -3'
miRNA:   3'- -GCCGA--UGCGCGa-CUUCggCU---UGCGug -5'
25057 5' -56.5 NC_005336.1 + 16872 0.66 0.876769
Target:  5'- gGGCaGCGCGCgcagcguGGCCugcCGCACg -3'
miRNA:   3'- gCCGaUGCGCGacu----UCGGcuuGCGUG- -5'
25057 5' -56.5 NC_005336.1 + 14982 0.66 0.876769
Target:  5'- gCGGCga-GCGCcGAGcGCCGGGCcucgggcucGCGCg -3'
miRNA:   3'- -GCCGaugCGCGaCUU-CGGCUUG---------CGUG- -5'
25057 5' -56.5 NC_005336.1 + 64000 0.66 0.876769
Target:  5'- uCGGCaagACGCGCUacGAGCgCGAgaGCgGCACc -3'
miRNA:   3'- -GCCGa--UGCGCGAc-UUCG-GCU--UG-CGUG- -5'
25057 5' -56.5 NC_005336.1 + 133140 0.66 0.876769
Target:  5'- -cGCUGCuGCGCUGGu-UCGAGgCGCGCa -3'
miRNA:   3'- gcCGAUG-CGCGACUucGGCUU-GCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.