miRNA display CGI


Results 1 - 20 of 380 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25057 5' -56.5 NC_005336.1 + 3515 0.69 0.697722
Target:  5'- gCGGCgGCGcCGC-GggGCggaaGAGCGCGCc -3'
miRNA:   3'- -GCCGaUGC-GCGaCuuCGg---CUUGCGUG- -5'
25057 5' -56.5 NC_005336.1 + 3515 0.69 0.697722
Target:  5'- gCGGCgGCGcCGC-GggGCggaaGAGCGCGCc -3'
miRNA:   3'- -GCCGaUGC-GCGaCuuCGg---CUUGCGUG- -5'
25057 5' -56.5 NC_005336.1 + 3736 0.76 0.316063
Target:  5'- gCGGCggGCGCGgUGAgggaAGCCG-GCGCGCg -3'
miRNA:   3'- -GCCGa-UGCGCgACU----UCGGCuUGCGUG- -5'
25057 5' -56.5 NC_005336.1 + 3736 0.76 0.316063
Target:  5'- gCGGCggGCGCGgUGAgggaAGCCG-GCGCGCg -3'
miRNA:   3'- -GCCGa-UGCGCgACU----UCGGCuUGCGUG- -5'
25057 5' -56.5 NC_005336.1 + 3868 0.68 0.7761
Target:  5'- gCGcGCgucGCGCGCcGAGGCCGcggcccCGCGCc -3'
miRNA:   3'- -GC-CGa--UGCGCGaCUUCGGCuu----GCGUG- -5'
25057 5' -56.5 NC_005336.1 + 3868 0.68 0.7761
Target:  5'- gCGcGCgucGCGCGCcGAGGCCGcggcccCGCGCc -3'
miRNA:   3'- -GC-CGa--UGCGCGaCUUCGGCuu----GCGUG- -5'
25057 5' -56.5 NC_005336.1 + 5805 0.74 0.448112
Target:  5'- aCGGCgcagGCG-GCcGAGGCCGGcgccGCGCGCg -3'
miRNA:   3'- -GCCGa---UGCgCGaCUUCGGCU----UGCGUG- -5'
25057 5' -56.5 NC_005336.1 + 5924 0.66 0.861896
Target:  5'- uCGGCcGCGCGCUccagGAAGgCGuuCGaCACg -3'
miRNA:   3'- -GCCGaUGCGCGA----CUUCgGCuuGC-GUG- -5'
25057 5' -56.5 NC_005336.1 + 6208 0.71 0.571743
Target:  5'- uGGCcacACGCGC-GAAGUCGAagucguuaagcgccGCGCGCa -3'
miRNA:   3'- gCCGa--UGCGCGaCUUCGGCU--------------UGCGUG- -5'
25057 5' -56.5 NC_005336.1 + 6221 0.73 0.485625
Target:  5'- gCGGCcgGCGCGCgagcacgGcGGCCGucgcACGCACg -3'
miRNA:   3'- -GCCGa-UGCGCGa------CuUCGGCu---UGCGUG- -5'
25057 5' -56.5 NC_005336.1 + 6658 0.67 0.821163
Target:  5'- gCGGCggagACGcCGCcGGAGCCcAGCaGCGCc -3'
miRNA:   3'- -GCCGa---UGC-GCGaCUUCGGcUUG-CGUG- -5'
25057 5' -56.5 NC_005336.1 + 7343 0.69 0.697722
Target:  5'- gCGGCUGC-CGCgGcAGCCGcgGGCGUGCg -3'
miRNA:   3'- -GCCGAUGcGCGaCuUCGGC--UUGCGUG- -5'
25057 5' -56.5 NC_005336.1 + 8100 0.72 0.564641
Target:  5'- gCGGCUACGUGCaGAGGCaCGGugcCGUAg -3'
miRNA:   3'- -GCCGAUGCGCGaCUUCG-GCUu--GCGUg -5'
25057 5' -56.5 NC_005336.1 + 8319 0.68 0.784484
Target:  5'- uGGUgcagcAUGCuguugagGCUGAAGUCGGugGCGCu -3'
miRNA:   3'- gCCGa----UGCG-------CGACUUCGGCUugCGUG- -5'
25057 5' -56.5 NC_005336.1 + 8467 0.7 0.626036
Target:  5'- uGGCgcCGCGCcGAAGCa--GCGCGCg -3'
miRNA:   3'- gCCGauGCGCGaCUUCGgcuUGCGUG- -5'
25057 5' -56.5 NC_005336.1 + 8967 0.75 0.403577
Target:  5'- uGGCaguccACGCGCUGAugaGGCCGuggacggcgcGGCGCGCg -3'
miRNA:   3'- gCCGa----UGCGCGACU---UCGGC----------UUGCGUG- -5'
25057 5' -56.5 NC_005336.1 + 9415 0.66 0.876046
Target:  5'- aGGCcGCGUGCaGAGcgcgcucgggcucGCCGAgaaccucgcucgGCGCGCg -3'
miRNA:   3'- gCCGaUGCGCGaCUU-------------CGGCU------------UGCGUG- -5'
25057 5' -56.5 NC_005336.1 + 9677 0.68 0.785409
Target:  5'- gCGGC-ACGCGCgcGGGuuGGACGC-Cg -3'
miRNA:   3'- -GCCGaUGCGCGacUUCggCUUGCGuG- -5'
25057 5' -56.5 NC_005336.1 + 10125 0.66 0.854142
Target:  5'- uGGCUGCGCcCaGGAGUCG-GCGCucGCg -3'
miRNA:   3'- gCCGAUGCGcGaCUUCGGCuUGCG--UG- -5'
25057 5' -56.5 NC_005336.1 + 10272 0.72 0.544485
Target:  5'- cCGGCgcagcgGCGUGCc-GAGCCG-GCGCACg -3'
miRNA:   3'- -GCCGa-----UGCGCGacUUCGGCuUGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.