miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25058 3' -55.2 NC_005336.1 + 125682 0.66 0.924123
Target:  5'- gGACCuUGAGGGCCUgaUgGCGUacugccgcacgugccUCauGAGCg -3'
miRNA:   3'- -CUGGuACUUCCGGA--AgCGCG---------------AG--CUCG- -5'
25058 3' -55.2 NC_005336.1 + 71699 0.66 0.921895
Target:  5'- cGCCGUGAucGGGCCgccggccCGCuuCUCGAGg -3'
miRNA:   3'- cUGGUACU--UCCGGaa-----GCGc-GAGCUCg -5'
25058 3' -55.2 NC_005336.1 + 133753 0.66 0.921895
Target:  5'- cGACCGU---GGUCcgCGCGUgCGAGCa -3'
miRNA:   3'- -CUGGUAcuuCCGGaaGCGCGaGCUCG- -5'
25058 3' -55.2 NC_005336.1 + 54405 0.66 0.921895
Target:  5'- cACgGUGAAGGaCC--CGCGCcUGGGCg -3'
miRNA:   3'- cUGgUACUUCC-GGaaGCGCGaGCUCG- -5'
25058 3' -55.2 NC_005336.1 + 30431 0.66 0.921895
Target:  5'- uGGCUagGgcGGCCgcCGCGUcgCGGGCc -3'
miRNA:   3'- -CUGGuaCuuCCGGaaGCGCGa-GCUCG- -5'
25058 3' -55.2 NC_005336.1 + 132071 0.66 0.921895
Target:  5'- cGGCCGUGAGcGcGCUggUCGUGCUgGucAGCa -3'
miRNA:   3'- -CUGGUACUU-C-CGGa-AGCGCGAgC--UCG- -5'
25058 3' -55.2 NC_005336.1 + 133378 0.66 0.921895
Target:  5'- -gUCGUGGAa---UUCGUGCUCGAGCg -3'
miRNA:   3'- cuGGUACUUccggAAGCGCGAGCUCG- -5'
25058 3' -55.2 NC_005336.1 + 106762 0.66 0.921895
Target:  5'- ---uGUGGAuGGCCUgggCGCGCaUGGGCc -3'
miRNA:   3'- cuggUACUU-CCGGAa--GCGCGaGCUCG- -5'
25058 3' -55.2 NC_005336.1 + 18714 0.66 0.921895
Target:  5'- uGGCgGUGccGGCgCcggUCGCGCUCGuccauGCu -3'
miRNA:   3'- -CUGgUACuuCCG-Ga--AGCGCGAGCu----CG- -5'
25058 3' -55.2 NC_005336.1 + 133253 0.66 0.921895
Target:  5'- cGGCCAagaucuccGAGGGCCUggUGCGCaugcucaCGGGCc -3'
miRNA:   3'- -CUGGUa-------CUUCCGGAa-GCGCGa------GCUCG- -5'
25058 3' -55.2 NC_005336.1 + 109018 0.66 0.918479
Target:  5'- cGGCCGUGAAGaucucguccgcgcacGCCUcCaCGCUCGcgaAGCg -3'
miRNA:   3'- -CUGGUACUUC---------------CGGAaGcGCGAGC---UCG- -5'
25058 3' -55.2 NC_005336.1 + 93756 0.66 0.916152
Target:  5'- uGGCCAcgcucguGGCCagCGUGCUCGucGGCg -3'
miRNA:   3'- -CUGGUacuu---CCGGaaGCGCGAGC--UCG- -5'
25058 3' -55.2 NC_005336.1 + 65905 0.66 0.916152
Target:  5'- aGGCCGUGc-GGCC--CGUGggCGAGCg -3'
miRNA:   3'- -CUGGUACuuCCGGaaGCGCgaGCUCG- -5'
25058 3' -55.2 NC_005336.1 + 77243 0.66 0.916152
Target:  5'- aGCCGUugccgaagacGAuGGCCUgCGCGCa-GAGCg -3'
miRNA:   3'- cUGGUA----------CUuCCGGAaGCGCGagCUCG- -5'
25058 3' -55.2 NC_005336.1 + 112353 0.66 0.916152
Target:  5'- --gCGUGGAcGCg--CGCGCUCGGGCc -3'
miRNA:   3'- cugGUACUUcCGgaaGCGCGAGCUCG- -5'
25058 3' -55.2 NC_005336.1 + 63602 0.66 0.916152
Target:  5'- uGGCCGUGAAccugcuGcGCCccggCGUGgUCGGGCa -3'
miRNA:   3'- -CUGGUACUU------C-CGGaa--GCGCgAGCUCG- -5'
25058 3' -55.2 NC_005336.1 + 132829 0.66 0.916152
Target:  5'- cGGCC--GGAGGUggUCGCGCUcaugcuggaggCGGGCg -3'
miRNA:   3'- -CUGGuaCUUCCGgaAGCGCGA-----------GCUCG- -5'
25058 3' -55.2 NC_005336.1 + 68347 0.66 0.910165
Target:  5'- cGCCGcgcucaagGAAGccGCCUUCGaCGCgCGGGCg -3'
miRNA:   3'- cUGGUa-------CUUC--CGGAAGC-GCGaGCUCG- -5'
25058 3' -55.2 NC_005336.1 + 24749 0.66 0.910165
Target:  5'- -uCCAguuUGAAGGUCUUgucgaccaCGCGCUCGuAGg -3'
miRNA:   3'- cuGGU---ACUUCCGGAA--------GCGCGAGC-UCg -5'
25058 3' -55.2 NC_005336.1 + 101651 0.66 0.910165
Target:  5'- cACCGagGAGGGCCgcgagUGCGUg-GAGCa -3'
miRNA:   3'- cUGGUa-CUUCCGGaa---GCGCGagCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.