miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25058 3' -55.2 NC_005336.1 + 102328 0.66 0.903934
Target:  5'- cGCCGUGAAGGCCaacuccUUCaCGCUCu--- -3'
miRNA:   3'- cUGGUACUUCCGG------AAGcGCGAGcucg -5'
25058 3' -55.2 NC_005336.1 + 68347 0.66 0.910165
Target:  5'- cGCCGcgcucaagGAAGccGCCUUCGaCGCgCGGGCg -3'
miRNA:   3'- cUGGUa-------CUUC--CGGAAGC-GCGaGCUCG- -5'
25058 3' -55.2 NC_005336.1 + 71699 0.66 0.921895
Target:  5'- cGCCGUGAucGGGCCgccggccCGCuuCUCGAGg -3'
miRNA:   3'- cUGGUACU--UCCGGaa-----GCGc-GAGCUCg -5'
25058 3' -55.2 NC_005336.1 + 109018 0.66 0.918479
Target:  5'- cGGCCGUGAAGaucucguccgcgcacGCCUcCaCGCUCGcgaAGCg -3'
miRNA:   3'- -CUGGUACUUC---------------CGGAaGcGCGAGC---UCG- -5'
25058 3' -55.2 NC_005336.1 + 97392 0.66 0.903934
Target:  5'- cGCCAUGguGGCCaUCGUGgUCagucGGCa -3'
miRNA:   3'- cUGGUACuuCCGGaAGCGCgAGc---UCG- -5'
25058 3' -55.2 NC_005336.1 + 129520 0.66 0.909553
Target:  5'- -uCCAcGAGGGCCgcgUugaggacugcggcCGCGC-CGAGCu -3'
miRNA:   3'- cuGGUaCUUCCGGa--A-------------GCGCGaGCUCG- -5'
25058 3' -55.2 NC_005336.1 + 13349 0.66 0.908321
Target:  5'- -uCCAUGAgcacaaugcagaccAGGUg--CGCGCUgGAGCa -3'
miRNA:   3'- cuGGUACU--------------UCCGgaaGCGCGAgCUCG- -5'
25058 3' -55.2 NC_005336.1 + 132071 0.66 0.921895
Target:  5'- cGGCCGUGAGcGcGCUggUCGUGCUgGucAGCa -3'
miRNA:   3'- -CUGGUACUU-C-CGGa-AGCGCGAgC--UCG- -5'
25058 3' -55.2 NC_005336.1 + 77243 0.66 0.916152
Target:  5'- aGCCGUugccgaagacGAuGGCCUgCGCGCa-GAGCg -3'
miRNA:   3'- cUGGUA----------CUuCCGGAaGCGCGagCUCG- -5'
25058 3' -55.2 NC_005336.1 + 14990 0.66 0.897464
Target:  5'- cGCCGaGcgccGGGCCUcgggcUCGCGCggcgcgCGGGCg -3'
miRNA:   3'- cUGGUaCu---UCCGGA-----AGCGCGa-----GCUCG- -5'
25058 3' -55.2 NC_005336.1 + 24749 0.66 0.910165
Target:  5'- -uCCAguuUGAAGGUCUUgucgaccaCGCGCUCGuAGg -3'
miRNA:   3'- cuGGU---ACUUCCGGAA--------GCGCGAGC-UCg -5'
25058 3' -55.2 NC_005336.1 + 21437 0.66 0.903934
Target:  5'- cGCCAUccAGGCCUacCGCGCUaccugcgcgGAGCu -3'
miRNA:   3'- cUGGUAcuUCCGGAa-GCGCGAg--------CUCG- -5'
25058 3' -55.2 NC_005336.1 + 133753 0.66 0.921895
Target:  5'- cGACCGU---GGUCcgCGCGUgCGAGCa -3'
miRNA:   3'- -CUGGUAcuuCCGGaaGCGCGaGCUCG- -5'
25058 3' -55.2 NC_005336.1 + 101651 0.66 0.910165
Target:  5'- cACCGagGAGGGCCgcgagUGCGUg-GAGCa -3'
miRNA:   3'- cUGGUa-CUUCCGGaa---GCGCGagCUCG- -5'
25058 3' -55.2 NC_005336.1 + 54405 0.66 0.921895
Target:  5'- cACgGUGAAGGaCC--CGCGCcUGGGCg -3'
miRNA:   3'- cUGgUACUUCC-GGaaGCGCGaGCUCG- -5'
25058 3' -55.2 NC_005336.1 + 110123 0.66 0.903934
Target:  5'- uGCCGcGAGGGCa-UgGC-CUCGAGCg -3'
miRNA:   3'- cUGGUaCUUCCGgaAgCGcGAGCUCG- -5'
25058 3' -55.2 NC_005336.1 + 125682 0.66 0.924123
Target:  5'- gGACCuUGAGGGCCUgaUgGCGUacugccgcacgugccUCauGAGCg -3'
miRNA:   3'- -CUGGuACUUCCGGA--AgCGCG---------------AG--CUCG- -5'
25058 3' -55.2 NC_005336.1 + 65905 0.66 0.916152
Target:  5'- aGGCCGUGc-GGCC--CGUGggCGAGCg -3'
miRNA:   3'- -CUGGUACuuCCGGaaGCGCgaGCUCG- -5'
25058 3' -55.2 NC_005336.1 + 30431 0.66 0.921895
Target:  5'- uGGCUagGgcGGCCgcCGCGUcgCGGGCc -3'
miRNA:   3'- -CUGGuaCuuCCGGaaGCGCGa-GCUCG- -5'
25058 3' -55.2 NC_005336.1 + 15974 0.66 0.903934
Target:  5'- aGGCCAagugcGAGGGCUcgCGCGCguccugCGuGCu -3'
miRNA:   3'- -CUGGUa----CUUCCGGaaGCGCGa-----GCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.