miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25058 3' -55.2 NC_005336.1 + 3635 0.68 0.83753
Target:  5'- uGGCCGgcgggagGGAGGUCUgCGCGC-CGcGGCg -3'
miRNA:   3'- -CUGGUa------CUUCCGGAaGCGCGaGC-UCG- -5'
25058 3' -55.2 NC_005336.1 + 3635 0.68 0.83753
Target:  5'- uGGCCGgcgggagGGAGGUCUgCGCGC-CGcGGCg -3'
miRNA:   3'- -CUGGUa------CUUCCGGAaGCGCGaGC-UCG- -5'
25058 3' -55.2 NC_005336.1 + 6292 0.67 0.876641
Target:  5'- aGGCCc--GAGGCCgccaCGUGCcCGAGCu -3'
miRNA:   3'- -CUGGuacUUCCGGaa--GCGCGaGCUCG- -5'
25058 3' -55.2 NC_005336.1 + 6691 0.69 0.751877
Target:  5'- uGGCCAUcuccaccGAGGGCCgcuggccuuccuccgCGCGCaUGAGCa -3'
miRNA:   3'- -CUGGUA-------CUUCCGGaa-------------GCGCGaGCUCG- -5'
25058 3' -55.2 NC_005336.1 + 6704 0.75 0.43434
Target:  5'- cGCCGUGGcagucgcAGGCgUUuggguucgcgcCGCGCUCGAGCa -3'
miRNA:   3'- cUGGUACU-------UCCGgAA-----------GCGCGAGCUCG- -5'
25058 3' -55.2 NC_005336.1 + 8323 0.75 0.457416
Target:  5'- cGACCGUGggGGCCauguggugUcgcauguaccacucaUCGUGCUUGAGUu -3'
miRNA:   3'- -CUGGUACuuCCGG--------A---------------AGCGCGAGCUCG- -5'
25058 3' -55.2 NC_005336.1 + 8891 0.69 0.76543
Target:  5'- cGCCAggcaGcGGGCCg-CGCGCUCGcGCa -3'
miRNA:   3'- cUGGUa---CuUCCGGaaGCGCGAGCuCG- -5'
25058 3' -55.2 NC_005336.1 + 8987 0.67 0.890755
Target:  5'- aGGCCGUGGAcGGCgCggCGCGCgu-AGCu -3'
miRNA:   3'- -CUGGUACUU-CCG-GaaGCGCGagcUCG- -5'
25058 3' -55.2 NC_005336.1 + 9135 0.67 0.890755
Target:  5'- cGCgCGUGgcGGUCaUCuGCGCcUCGAGCc -3'
miRNA:   3'- cUG-GUACuuCCGGaAG-CGCG-AGCUCG- -5'
25058 3' -55.2 NC_005336.1 + 9407 0.79 0.258114
Target:  5'- cGCUAcGAAGGCCgcgugcagagCGCGCUCGGGCu -3'
miRNA:   3'- cUGGUaCUUCCGGaa--------GCGCGAGCUCG- -5'
25058 3' -55.2 NC_005336.1 + 12229 0.69 0.802749
Target:  5'- cGCCGUGc--GCCggaugaugUCGCGCgCGAGCg -3'
miRNA:   3'- cUGGUACuucCGGa-------AGCGCGaGCUCG- -5'
25058 3' -55.2 NC_005336.1 + 13164 0.67 0.883812
Target:  5'- cGACCAU--GGGCgagUCGCGagcCUCGAGUc -3'
miRNA:   3'- -CUGGUAcuUCCGga-AGCGC---GAGCUCG- -5'
25058 3' -55.2 NC_005336.1 + 13349 0.66 0.908321
Target:  5'- -uCCAUGAgcacaaugcagaccAGGUg--CGCGCUgGAGCa -3'
miRNA:   3'- cuGGUACU--------------UCCGgaaGCGCGAgCUCG- -5'
25058 3' -55.2 NC_005336.1 + 13400 0.67 0.876641
Target:  5'- cGCCGgaaacgcGAAGGgCUucgagcgcaUCGCGCUCGcGCa -3'
miRNA:   3'- cUGGUa------CUUCCgGA---------AGCGCGAGCuCG- -5'
25058 3' -55.2 NC_005336.1 + 14053 0.7 0.705991
Target:  5'- cGAUCAUGgcGGCggcCGCGCcggccUCGAGCa -3'
miRNA:   3'- -CUGGUACuuCCGgaaGCGCG-----AGCUCG- -5'
25058 3' -55.2 NC_005336.1 + 14280 0.67 0.861628
Target:  5'- cGCCAUGGugcGGCUcUgGCGCaUGAGCu -3'
miRNA:   3'- cUGGUACUu--CCGGaAgCGCGaGCUCG- -5'
25058 3' -55.2 NC_005336.1 + 14641 0.72 0.602734
Target:  5'- aGAgCAUGGAGGCgCU--GCGCgCGAGCa -3'
miRNA:   3'- -CUgGUACUUCCG-GAagCGCGaGCUCG- -5'
25058 3' -55.2 NC_005336.1 + 14990 0.66 0.897464
Target:  5'- cGCCGaGcgccGGGCCUcgggcUCGCGCggcgcgCGGGCg -3'
miRNA:   3'- cUGGUaCu---UCCGGA-----AGCGCGa-----GCUCG- -5'
25058 3' -55.2 NC_005336.1 + 15974 0.66 0.903934
Target:  5'- aGGCCAagugcGAGGGCUcgCGCGCguccugCGuGCu -3'
miRNA:   3'- -CUGGUa----CUUCCGGaaGCGCGa-----GCuCG- -5'
25058 3' -55.2 NC_005336.1 + 18714 0.66 0.921895
Target:  5'- uGGCgGUGccGGCgCcggUCGCGCUCGuccauGCu -3'
miRNA:   3'- -CUGgUACuuCCG-Ga--AGCGCGAGCu----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.