miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25059 3' -56.7 NC_005336.1 + 101726 0.66 0.87562
Target:  5'- cGCGGCCGCggacgUGGccACCgcgagCgUGgacUUCCUCAa -3'
miRNA:   3'- -CGCCGGCG-----ACC--UGGa----G-ACa--AAGGAGU- -5'
25059 3' -56.7 NC_005336.1 + 75981 0.66 0.87562
Target:  5'- gGCGGCCGCgcggcGGuagGCCUCgGUcugCUUCGc -3'
miRNA:   3'- -CGCCGGCGa----CC---UGGAGaCAaa-GGAGU- -5'
25059 3' -56.7 NC_005336.1 + 119740 0.66 0.868283
Target:  5'- cGCGGUCGCccugcgaGGccGCCUCUGgugCUUCGa -3'
miRNA:   3'- -CGCCGGCGa------CC--UGGAGACaaaGGAGU- -5'
25059 3' -56.7 NC_005336.1 + 5477 0.66 0.868283
Target:  5'- cGCGGCCGCgUGG-CCgCUGUUcaCCa-- -3'
miRNA:   3'- -CGCCGGCG-ACCuGGaGACAAa-GGagu -5'
25059 3' -56.7 NC_005336.1 + 64350 0.66 0.860733
Target:  5'- aGCGGCU-CUgaGGGCCUCaGcUUCCUCu -3'
miRNA:   3'- -CGCCGGcGA--CCUGGAGaCaAAGGAGu -5'
25059 3' -56.7 NC_005336.1 + 14063 0.66 0.852976
Target:  5'- gGCGGCCGCgccGGCCUCgagcaccugGUcUCCg-- -3'
miRNA:   3'- -CGCCGGCGac-CUGGAGa--------CAaAGGagu -5'
25059 3' -56.7 NC_005336.1 + 69773 0.66 0.845017
Target:  5'- aGCGcccGCUGCUGGACCUgUGccggCgCUCGg -3'
miRNA:   3'- -CGC---CGGCGACCUGGAgACaaa-G-GAGU- -5'
25059 3' -56.7 NC_005336.1 + 39364 0.67 0.836865
Target:  5'- gGCGGCCGC-GaGACCUUcGUcUCCa-- -3'
miRNA:   3'- -CGCCGGCGaC-CUGGAGaCAaAGGagu -5'
25059 3' -56.7 NC_005336.1 + 102250 0.67 0.836865
Target:  5'- aGUGGaaggucCCGCUGGGCUUCU---UCUUCAa -3'
miRNA:   3'- -CGCC------GGCGACCUGGAGAcaaAGGAGU- -5'
25059 3' -56.7 NC_005336.1 + 61024 0.67 0.828525
Target:  5'- -aGGCgCGCgccaaGGACCUCUucGUggccgaccccUUCCUCAa -3'
miRNA:   3'- cgCCG-GCGa----CCUGGAGA--CA----------AAGGAGU- -5'
25059 3' -56.7 NC_005336.1 + 122195 0.67 0.820007
Target:  5'- uGCGcGCCGCacaUGGugCUCaucugCCUCAg -3'
miRNA:   3'- -CGC-CGGCG---ACCugGAGacaaaGGAGU- -5'
25059 3' -56.7 NC_005336.1 + 26035 0.67 0.806023
Target:  5'- cGCGGCCGCccucguagaagaacuUGGACUUC-GUgUCCg-- -3'
miRNA:   3'- -CGCCGGCG---------------ACCUGGAGaCAaAGGagu -5'
25059 3' -56.7 NC_005336.1 + 76326 0.67 0.802463
Target:  5'- cGCgGGCCGCUGGcGCC-Cg---UCCUCc -3'
miRNA:   3'- -CG-CCGGCGACC-UGGaGacaaAGGAGu -5'
25059 3' -56.7 NC_005336.1 + 86027 0.68 0.7843
Target:  5'- gGCGGCCucGCUGG-CCgugCUGccUUUCgUCAg -3'
miRNA:   3'- -CGCCGG--CGACCuGGa--GAC--AAAGgAGU- -5'
25059 3' -56.7 NC_005336.1 + 44690 0.68 0.775008
Target:  5'- cGUGGCCGUuccgGGcACCUC-GUUUCC-CGa -3'
miRNA:   3'- -CGCCGGCGa---CC-UGGAGaCAAAGGaGU- -5'
25059 3' -56.7 NC_005336.1 + 88578 0.68 0.774072
Target:  5'- aGCuGUCGCUGGGCUUCUuccugcagcggcuGgacUUCCUCAc -3'
miRNA:   3'- -CGcCGGCGACCUGGAGA-------------Ca--AAGGAGU- -5'
25059 3' -56.7 NC_005336.1 + 47642 0.68 0.765588
Target:  5'- cGUGcacCCGCUGGACgCUCUc-UUCCUCGa -3'
miRNA:   3'- -CGCc--GGCGACCUG-GAGAcaAAGGAGU- -5'
25059 3' -56.7 NC_005336.1 + 112947 0.68 0.746399
Target:  5'- aGauGCCGCUGGACUUCgugGUcaCCUUc -3'
miRNA:   3'- -CgcCGGCGACCUGGAGa--CAaaGGAGu -5'
25059 3' -56.7 NC_005336.1 + 70570 0.68 0.736649
Target:  5'- aCGGCgUGCUGGACCUggccacgGgcgagUUCCUCAc -3'
miRNA:   3'- cGCCG-GCGACCUGGAga-----Ca----AAGGAGU- -5'
25059 3' -56.7 NC_005336.1 + 59190 0.69 0.69683
Target:  5'- gGCGGCCG-UGGACCUCg----CCgcgCAg -3'
miRNA:   3'- -CGCCGGCgACCUGGAGacaaaGGa--GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.