miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25059 5' -54.1 NC_005336.1 + 78317 0.65 0.954425
Target:  5'- cCUCGCGGAugcugcgACGCAcg--GCCUCCAc- -3'
miRNA:   3'- -GAGCGCCU-------UGUGUccuaUGGAGGUca -5'
25059 5' -54.1 NC_005336.1 + 54252 0.65 0.953622
Target:  5'- -gCGCGGAGCACGGaAUccgcugcguguccgACCUCgAGg -3'
miRNA:   3'- gaGCGCCUUGUGUCcUA--------------UGGAGgUCa -5'
25059 5' -54.1 NC_005336.1 + 5775 0.66 0.941839
Target:  5'- aCUCGUacggcaGGaAGCACAGGAUggaggucacgAUCUCCGGc -3'
miRNA:   3'- -GAGCG------CC-UUGUGUCCUA----------UGGAGGUCa -5'
25059 5' -54.1 NC_005336.1 + 103941 0.66 0.941368
Target:  5'- aUCGUGGucagcaaGGCGCuGGAgACCUCCAa- -3'
miRNA:   3'- gAGCGCC-------UUGUGuCCUaUGGAGGUca -5'
25059 5' -54.1 NC_005336.1 + 9297 0.66 0.937023
Target:  5'- -cCGCGGGgucgaagaGCACGGGGaucuugACCUCCGc- -3'
miRNA:   3'- gaGCGCCU--------UGUGUCCUa-----UGGAGGUca -5'
25059 5' -54.1 NC_005336.1 + 108149 0.66 0.936528
Target:  5'- aUCGUGGAGCGCAacgccguggacauGGAgugguuuaccGCCUCCAa- -3'
miRNA:   3'- gAGCGCCUUGUGU-------------CCUa---------UGGAGGUca -5'
25059 5' -54.1 NC_005336.1 + 10296 0.66 0.931961
Target:  5'- cCUCGUGGAcuaGCAUGcGGAgaACCUCCAcGUc -3'
miRNA:   3'- -GAGCGCCU---UGUGU-CCUa-UGGAGGU-CA- -5'
25059 5' -54.1 NC_005336.1 + 32978 0.66 0.931961
Target:  5'- aUCGUGGGGCccGCGGGAgGCUcgugCCGGUc -3'
miRNA:   3'- gAGCGCCUUG--UGUCCUaUGGa---GGUCA- -5'
25059 5' -54.1 NC_005336.1 + 78559 0.67 0.92665
Target:  5'- cCUCGCGGAGCGCgaagaagaccaAGGAcGCCagcgUCgAGg -3'
miRNA:   3'- -GAGCGCCUUGUG-----------UCCUaUGG----AGgUCa -5'
25059 5' -54.1 NC_005336.1 + 15915 0.67 0.92665
Target:  5'- -aCGUGGAggGCauggGCAGGGUGCucgugCUCCGGUa -3'
miRNA:   3'- gaGCGCCU--UG----UGUCCUAUG-----GAGGUCA- -5'
25059 5' -54.1 NC_005336.1 + 96309 0.67 0.921091
Target:  5'- --gGCGGAgcgaguGCGCAcGAUACCgcggCCAGUg -3'
miRNA:   3'- gagCGCCU------UGUGUcCUAUGGa---GGUCA- -5'
25059 5' -54.1 NC_005336.1 + 138198 0.67 0.921091
Target:  5'- gCUCGCucGGACGCAGGucgGCCUCUc-- -3'
miRNA:   3'- -GAGCGc-CUUGUGUCCua-UGGAGGuca -5'
25059 5' -54.1 NC_005336.1 + 138198 0.67 0.921091
Target:  5'- gCUCGCucGGACGCAGGucgGCCUCUc-- -3'
miRNA:   3'- -GAGCGc-CUUGUGUCCua-UGGAGGuca -5'
25059 5' -54.1 NC_005336.1 + 40774 0.67 0.921091
Target:  5'- -gCGCGGAGgGCAGcaccGcgACCgUCCAGUa -3'
miRNA:   3'- gaGCGCCUUgUGUC----CuaUGG-AGGUCA- -5'
25059 5' -54.1 NC_005336.1 + 25311 0.67 0.915283
Target:  5'- -cCGCGaGAACGCGaugucGGAggcgcccACCUCCAGg -3'
miRNA:   3'- gaGCGC-CUUGUGU-----CCUa------UGGAGGUCa -5'
25059 5' -54.1 NC_005336.1 + 12148 0.67 0.909229
Target:  5'- gCUCGCGGGGuCGCAgccGGcgGCCaCCAGc -3'
miRNA:   3'- -GAGCGCCUU-GUGU---CCuaUGGaGGUCa -5'
25059 5' -54.1 NC_005336.1 + 31562 0.68 0.896387
Target:  5'- gCUCGCGG---GCAGGAgcacguCCUCCAc- -3'
miRNA:   3'- -GAGCGCCuugUGUCCUau----GGAGGUca -5'
25059 5' -54.1 NC_005336.1 + 121251 0.68 0.875341
Target:  5'- gCUCGCGGAugACGcGGcUGCuCUUCGGc -3'
miRNA:   3'- -GAGCGCCUugUGU-CCuAUG-GAGGUCa -5'
25059 5' -54.1 NC_005336.1 + 25017 0.69 0.852265
Target:  5'- gUCGuCGGGAC-CAGGcccUACCUCCAc- -3'
miRNA:   3'- gAGC-GCCUUGuGUCCu--AUGGAGGUca -5'
25059 5' -54.1 NC_005336.1 + 84159 0.69 0.844149
Target:  5'- gUCGCGGAGCACGcGGcgACCggCguGg -3'
miRNA:   3'- gAGCGCCUUGUGU-CCuaUGGa-GguCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.