miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25059 5' -54.1 NC_005336.1 + 41927 0.69 0.844149
Target:  5'- gCUCGCGGAGCGCGGcGUGCagcCCGa- -3'
miRNA:   3'- -GAGCGCCUUGUGUCcUAUGga-GGUca -5'
25059 5' -54.1 NC_005336.1 + 84159 0.69 0.844149
Target:  5'- gUCGCGGAGCACGcGGcgACCggCguGg -3'
miRNA:   3'- gAGCGCCUUGUGU-CCuaUGGa-GguCa -5'
25059 5' -54.1 NC_005336.1 + 60089 0.69 0.818633
Target:  5'- -cCGCGG-ACACcaucuGGGAgACCUCCGGc -3'
miRNA:   3'- gaGCGCCuUGUG-----UCCUaUGGAGGUCa -5'
25059 5' -54.1 NC_005336.1 + 139683 0.7 0.809765
Target:  5'- uCUCGCGGcu-GCGGGGUgccGCCUCCGc- -3'
miRNA:   3'- -GAGCGCCuugUGUCCUA---UGGAGGUca -5'
25059 5' -54.1 NC_005336.1 + 130682 0.7 0.809765
Target:  5'- -cUGCGGugucugucuACACAGGAccugcggGCCUCCGGa -3'
miRNA:   3'- gaGCGCCu--------UGUGUCCUa------UGGAGGUCa -5'
25059 5' -54.1 NC_005336.1 + 138898 0.7 0.809765
Target:  5'- -gCGCGGAGgGCGGGucGCCUCCc-- -3'
miRNA:   3'- gaGCGCCUUgUGUCCuaUGGAGGuca -5'
25059 5' -54.1 NC_005336.1 + 139683 0.7 0.809765
Target:  5'- uCUCGCGGcu-GCGGGGUgccGCCUCCGc- -3'
miRNA:   3'- -GAGCGCCuugUGUCCUA---UGGAGGUca -5'
25059 5' -54.1 NC_005336.1 + 138898 0.7 0.809765
Target:  5'- -gCGCGGAGgGCGGGucGCCUCCc-- -3'
miRNA:   3'- gaGCGCCUUgUGUCCuaUGGAGGuca -5'
25059 5' -54.1 NC_005336.1 + 84097 0.7 0.800728
Target:  5'- -gCGCGGGgcACGCAGGA-GCCggagCCGGa -3'
miRNA:   3'- gaGCGCCU--UGUGUCCUaUGGa---GGUCa -5'
25059 5' -54.1 NC_005336.1 + 41138 0.7 0.799816
Target:  5'- cCUCGCaggcgacGGcGCGCGGGAaaaugACCUCCGGc -3'
miRNA:   3'- -GAGCG-------CCuUGUGUCCUa----UGGAGGUCa -5'
25059 5' -54.1 NC_005336.1 + 84964 0.7 0.791534
Target:  5'- uUCGCGGggUcCuGGAacACCUCCAGc -3'
miRNA:   3'- gAGCGCCuuGuGuCCUa-UGGAGGUCa -5'
25059 5' -54.1 NC_005336.1 + 99969 0.7 0.772705
Target:  5'- cCUCGCGugcGAguGCAUGGGAUACCcgcgCCAGa -3'
miRNA:   3'- -GAGCGC---CU--UGUGUCCUAUGGa---GGUCa -5'
25059 5' -54.1 NC_005336.1 + 12307 0.72 0.70321
Target:  5'- gUCGCGGGAuCGCAGGAagGCgUgCAGUg -3'
miRNA:   3'- gAGCGCCUU-GUGUCCUa-UGgAgGUCA- -5'
25059 5' -54.1 NC_005336.1 + 23945 0.73 0.630643
Target:  5'- gUCGCGGGG-ACAGGggGCCgUCCGGg -3'
miRNA:   3'- gAGCGCCUUgUGUCCuaUGG-AGGUCa -5'
25059 5' -54.1 NC_005336.1 + 120551 1.08 0.004538
Target:  5'- gCUCGCGGAACACAGGAUACCUCCAGUg -3'
miRNA:   3'- -GAGCGCCUUGUGUCCUAUGGAGGUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.