miRNA display CGI


Results 1 - 20 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25060 3' -56.5 NC_005336.1 + 99049 0.66 0.886203
Target:  5'- aCGUgCUGCACGccaucucgGAGCGCgacuGCGUGGUGc -3'
miRNA:   3'- -GUAgGACGUGCa-------CUUGCG----CGCGUCGC- -5'
25060 3' -56.5 NC_005336.1 + 91600 0.66 0.886203
Target:  5'- -uUCCacGCGCGgcucGAAgGCGCGC-GCGa -3'
miRNA:   3'- guAGGa-CGUGCa---CUUgCGCGCGuCGC- -5'
25060 3' -56.5 NC_005336.1 + 135858 0.66 0.886203
Target:  5'- -cUgCUGCGCGcGGcgcuGCGC-CGCGGCGg -3'
miRNA:   3'- guAgGACGUGCaCU----UGCGcGCGUCGC- -5'
25060 3' -56.5 NC_005336.1 + 78328 0.66 0.886203
Target:  5'- uCAUCCUGaacuuccucauCGCGaucAACGCGCGcCGGCa -3'
miRNA:   3'- -GUAGGAC-----------GUGCac-UUGCGCGC-GUCGc -5'
25060 3' -56.5 NC_005336.1 + 92165 0.66 0.886203
Target:  5'- gCGUCCaGCGgGUGcACGUacGUGCGGCu -3'
miRNA:   3'- -GUAGGaCGUgCACuUGCG--CGCGUCGc -5'
25060 3' -56.5 NC_005336.1 + 124857 0.66 0.886203
Target:  5'- aGUUCUGgCACGgcGAgcACGUGCGcCGGCGc -3'
miRNA:   3'- gUAGGAC-GUGCa-CU--UGCGCGC-GUCGC- -5'
25060 3' -56.5 NC_005336.1 + 24568 0.66 0.886203
Target:  5'- --aCCUGCAacuuCGcGcACGCGCGCAcGCa -3'
miRNA:   3'- guaGGACGU----GCaCuUGCGCGCGU-CGc -5'
25060 3' -56.5 NC_005336.1 + 11897 0.66 0.886203
Target:  5'- --cCCUGCGCcagGGACGCcaccucugcGgGCAGCGu -3'
miRNA:   3'- guaGGACGUGca-CUUGCG---------CgCGUCGC- -5'
25060 3' -56.5 NC_005336.1 + 16345 0.66 0.886203
Target:  5'- --cCCUcCGCGgcggGGugGCGCGuCAGCa -3'
miRNA:   3'- guaGGAcGUGCa---CUugCGCGC-GUCGc -5'
25060 3' -56.5 NC_005336.1 + 24687 0.66 0.884817
Target:  5'- -cUCCUGCACGUGccuggagacuuCGUuCGuCAGCGg -3'
miRNA:   3'- guAGGACGUGCACuu---------GCGcGC-GUCGC- -5'
25060 3' -56.5 NC_005336.1 + 33424 0.66 0.87918
Target:  5'- -cUCCUcGCGCGUcaucGAGCGCaugagguagucGUGCAGCc -3'
miRNA:   3'- guAGGA-CGUGCA----CUUGCG-----------CGCGUCGc -5'
25060 3' -56.5 NC_005336.1 + 71484 0.66 0.87918
Target:  5'- uGUCCaagcugggGUACGUGcuCGUGgGCGGCa -3'
miRNA:   3'- gUAGGa-------CGUGCACuuGCGCgCGUCGc -5'
25060 3' -56.5 NC_005336.1 + 3694 0.66 0.87918
Target:  5'- gGUCCuuuuucacuuUGCGCGgccggGAgagGCGCccgggGCGCGGCGg -3'
miRNA:   3'- gUAGG----------ACGUGCa----CU---UGCG-----CGCGUCGC- -5'
25060 3' -56.5 NC_005336.1 + 41069 0.66 0.87918
Target:  5'- uGUCCaGCgagGCGUGcACGCGCGCcAGg- -3'
miRNA:   3'- gUAGGaCG---UGCACuUGCGCGCG-UCgc -5'
25060 3' -56.5 NC_005336.1 + 91657 0.66 0.87918
Target:  5'- cCAUUCUgGCGCG-GGAgGCGUcggugaGCAGCGc -3'
miRNA:   3'- -GUAGGA-CGUGCaCUUgCGCG------CGUCGC- -5'
25060 3' -56.5 NC_005336.1 + 99594 0.66 0.87918
Target:  5'- ---aCUGCcCGgugcUGAucucCGCGCGCGGCGa -3'
miRNA:   3'- guagGACGuGC----ACUu---GCGCGCGUCGC- -5'
25060 3' -56.5 NC_005336.1 + 135936 0.66 0.87918
Target:  5'- --gCCUcgGCGCGc-GACGCGCGCGGgCGc -3'
miRNA:   3'- guaGGA--CGUGCacUUGCGCGCGUC-GC- -5'
25060 3' -56.5 NC_005336.1 + 97050 0.66 0.87918
Target:  5'- ---aCUGCGCGacucCGCGCGCAuGCGc -3'
miRNA:   3'- guagGACGUGCacuuGCGCGCGU-CGC- -5'
25060 3' -56.5 NC_005336.1 + 94224 0.66 0.87918
Target:  5'- --aCCaGCGCGUGGAagGCGCGCAc-- -3'
miRNA:   3'- guaGGaCGUGCACUUg-CGCGCGUcgc -5'
25060 3' -56.5 NC_005336.1 + 77173 0.66 0.87918
Target:  5'- --aCCggGCGCGaGAGCGCGUGguaGGCGc -3'
miRNA:   3'- guaGGa-CGUGCaCUUGCGCGCg--UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.