miRNA display CGI


Results 1 - 20 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25060 3' -56.5 NC_005336.1 + 110438 0.73 0.508749
Target:  5'- aUAUCUgcgcgaUGCGCGUGAGCaUGUGCAGCa -3'
miRNA:   3'- -GUAGG------ACGUGCACUUGcGCGCGUCGc -5'
25060 3' -56.5 NC_005336.1 + 53584 0.75 0.381643
Target:  5'- cCAUgCaGCGCGUGGGCGgGCGCcGCGa -3'
miRNA:   3'- -GUAgGaCGUGCACUUGCgCGCGuCGC- -5'
25060 3' -56.5 NC_005336.1 + 125144 0.75 0.381643
Target:  5'- --cCCgGaCACGUGGugcuCGCGCGCAGCGc -3'
miRNA:   3'- guaGGaC-GUGCACUu---GCGCGCGUCGC- -5'
25060 3' -56.5 NC_005336.1 + 29226 0.75 0.407093
Target:  5'- gCAUCgUGCGCGgGAACGuCGCGUugaGGCGg -3'
miRNA:   3'- -GUAGgACGUGCaCUUGC-GCGCG---UCGC- -5'
25060 3' -56.5 NC_005336.1 + 68197 0.73 0.479855
Target:  5'- cCGUCCcucCGCGUGGACGCuGCGC-GCGg -3'
miRNA:   3'- -GUAGGac-GUGCACUUGCG-CGCGuCGC- -5'
25060 3' -56.5 NC_005336.1 + 9369 0.73 0.4894
Target:  5'- --gCCcGCGCGUGAGCGUgcucaccacGCGCGGCu -3'
miRNA:   3'- guaGGaCGUGCACUUGCG---------CGCGUCGc -5'
25060 3' -56.5 NC_005336.1 + 17242 0.73 0.499033
Target:  5'- aGUCgaGCGCGcggcuggcGAGCGCGCGCGcGCGg -3'
miRNA:   3'- gUAGgaCGUGCa-------CUUGCGCGCGU-CGC- -5'
25060 3' -56.5 NC_005336.1 + 65420 0.73 0.499033
Target:  5'- cCAUCCgcguggaGCugGUGAaccGCGUGCGCGuGCGc -3'
miRNA:   3'- -GUAGGa------CGugCACU---UGCGCGCGU-CGC- -5'
25060 3' -56.5 NC_005336.1 + 134015 0.73 0.508749
Target:  5'- --gCCgUGCGCGUGggUGCgguGCGCGGCc -3'
miRNA:   3'- guaGG-ACGUGCACuuGCG---CGCGUCGc -5'
25060 3' -56.5 NC_005336.1 + 42614 0.75 0.380813
Target:  5'- --gCCUGUguggacgGCGUGcuCGCGCGCGGCGc -3'
miRNA:   3'- guaGGACG-------UGCACuuGCGCGCGUCGC- -5'
25060 3' -56.5 NC_005336.1 + 85303 0.76 0.357275
Target:  5'- gGUCCUGCgGCGaGAACuucuCGCGCAGCGa -3'
miRNA:   3'- gUAGGACG-UGCaCUUGc---GCGCGUCGC- -5'
25060 3' -56.5 NC_005336.1 + 81360 0.76 0.348618
Target:  5'- gGUCCUcguugaugaaGCGCGUGAGguucagcgagcacCGCGUGCAGCGc -3'
miRNA:   3'- gUAGGA----------CGUGCACUU-------------GCGCGCGUCGC- -5'
25060 3' -56.5 NC_005336.1 + 35301 0.8 0.202333
Target:  5'- aGUCCaGCACuGUGAGCaCGCGCAGCGc -3'
miRNA:   3'- gUAGGaCGUG-CACUUGcGCGCGUCGC- -5'
25060 3' -56.5 NC_005336.1 + 133967 0.79 0.223374
Target:  5'- -uUCCUGCGCcggcUGGccGCGCGCGCGGCGc -3'
miRNA:   3'- guAGGACGUGc---ACU--UGCGCGCGUCGC- -5'
25060 3' -56.5 NC_005336.1 + 16856 0.79 0.240352
Target:  5'- uGUCCacgaGCAgCGUGGgcaGCGCGCGCAGCGu -3'
miRNA:   3'- gUAGGa---CGU-GCACU---UGCGCGCGUCGC- -5'
25060 3' -56.5 NC_005336.1 + 33907 0.77 0.297771
Target:  5'- -cUCCUGCACaaaGGGCGCGUGUAGCa -3'
miRNA:   3'- guAGGACGUGca-CUUGCGCGCGUCGc -5'
25060 3' -56.5 NC_005336.1 + 80125 0.76 0.319144
Target:  5'- -cUCCgugGCGCGcgucucguugaUGAGCGCGCGCAcGCGg -3'
miRNA:   3'- guAGGa--CGUGC-----------ACUUGCGCGCGU-CGC- -5'
25060 3' -56.5 NC_005336.1 + 50301 0.76 0.326519
Target:  5'- --cCCUGCGCGcGGGCGCGCGUucgcGCGa -3'
miRNA:   3'- guaGGACGUGCaCUUGCGCGCGu---CGC- -5'
25060 3' -56.5 NC_005336.1 + 6607 0.76 0.326519
Target:  5'- gCGUCCacgGCGCGUGcgucugcgccCGCGCGCAGCa -3'
miRNA:   3'- -GUAGGa--CGUGCACuu--------GCGCGCGUCGc -5'
25060 3' -56.5 NC_005336.1 + 7002 0.76 0.334021
Target:  5'- uCGUgCUGCACGUaGGCGUGCaGCGGCGu -3'
miRNA:   3'- -GUAgGACGUGCAcUUGCGCG-CGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.