miRNA display CGI


Results 1 - 20 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25060 5' -53 NC_005336.1 + 75977 0.66 0.964968
Target:  5'- -cCAugGCGGCCg-CGCGG-CGGu-- -3'
miRNA:   3'- uaGUugCGCCGGaaGUGCCuGCUuua -5'
25060 5' -53 NC_005336.1 + 52067 0.66 0.964968
Target:  5'- ---cGCGCGcGCCUUCGUGGACGc--- -3'
miRNA:   3'- uaguUGCGC-CGGAAGUGCCUGCuuua -5'
25060 5' -53 NC_005336.1 + 53217 0.66 0.964968
Target:  5'- --gGACGCGGCC---ACGGACGc--- -3'
miRNA:   3'- uagUUGCGCCGGaagUGCCUGCuuua -5'
25060 5' -53 NC_005336.1 + 104178 0.66 0.964968
Target:  5'- uUCAugGCGGgCgugacCAUGGACGGc-- -3'
miRNA:   3'- uAGUugCGCCgGaa---GUGCCUGCUuua -5'
25060 5' -53 NC_005336.1 + 41101 0.66 0.964968
Target:  5'- gAUCucuGCGCGcGUgaUgACGGACGAGAa -3'
miRNA:   3'- -UAGu--UGCGC-CGgaAgUGCCUGCUUUa -5'
25060 5' -53 NC_005336.1 + 23354 0.66 0.961455
Target:  5'- cAUCGagcucGCGCGGuaCCUgcggcgCACGGGCGAc-- -3'
miRNA:   3'- -UAGU-----UGCGCC--GGAa-----GUGCCUGCUuua -5'
25060 5' -53 NC_005336.1 + 22226 0.66 0.961455
Target:  5'- uUCAgcgcagacGCGCGGCugcgagagcgCUUCACGGACa---- -3'
miRNA:   3'- uAGU--------UGCGCCG----------GAAGUGCCUGcuuua -5'
25060 5' -53 NC_005336.1 + 136532 0.66 0.961455
Target:  5'- ---uGCGCGGCCUgCG-GGACGAc-- -3'
miRNA:   3'- uaguUGCGCCGGAaGUgCCUGCUuua -5'
25060 5' -53 NC_005336.1 + 102517 0.66 0.961455
Target:  5'- -aCGGCGCGGCCaucCACGaaaaGGCGGAc- -3'
miRNA:   3'- uaGUUGCGCCGGaa-GUGC----CUGCUUua -5'
25060 5' -53 NC_005336.1 + 86524 0.66 0.961455
Target:  5'- cGUC-GCGCGGCCUUgUGCGGaaacaugcucGCGAGGc -3'
miRNA:   3'- -UAGuUGCGCCGGAA-GUGCC----------UGCUUUa -5'
25060 5' -53 NC_005336.1 + 15011 0.66 0.961455
Target:  5'- cUC-GCGCGGCg--CGCGGGCGGc-- -3'
miRNA:   3'- uAGuUGCGCCGgaaGUGCCUGCUuua -5'
25060 5' -53 NC_005336.1 + 136532 0.66 0.961455
Target:  5'- ---uGCGCGGCCUgCG-GGACGAc-- -3'
miRNA:   3'- uaguUGCGCCGGAaGUgCCUGCUuua -5'
25060 5' -53 NC_005336.1 + 45318 0.66 0.961455
Target:  5'- cUCGGCGuCGGCCgUCuCGG-CGggGUc -3'
miRNA:   3'- uAGUUGC-GCCGGaAGuGCCuGCuuUA- -5'
25060 5' -53 NC_005336.1 + 94102 0.66 0.957706
Target:  5'- ---cACGCGGCCUcggaguUCGCGGcCGGu-- -3'
miRNA:   3'- uaguUGCGCCGGA------AGUGCCuGCUuua -5'
25060 5' -53 NC_005336.1 + 114937 0.66 0.957706
Target:  5'- -aCAACGCGGCgaaCGCGGAggccauCGAGAUc -3'
miRNA:   3'- uaGUUGCGCCGgaaGUGCCU------GCUUUA- -5'
25060 5' -53 NC_005336.1 + 62489 0.66 0.957706
Target:  5'- -gCGGCGUGcgcGCCUUCGUGGGCGAc-- -3'
miRNA:   3'- uaGUUGCGC---CGGAAGUGCCUGCUuua -5'
25060 5' -53 NC_005336.1 + 12060 0.66 0.957706
Target:  5'- ----cCGCGGCCagcaGCGGGCGGAu- -3'
miRNA:   3'- uaguuGCGCCGGaag-UGCCUGCUUua -5'
25060 5' -53 NC_005336.1 + 92223 0.66 0.957706
Target:  5'- -aCAGCGUGGggagCACGGugGAGAc -3'
miRNA:   3'- uaGUUGCGCCggaaGUGCCugCUUUa -5'
25060 5' -53 NC_005336.1 + 102644 0.66 0.957706
Target:  5'- cUCAuCGCGGCCgagCACGcGAagcaGAAGUc -3'
miRNA:   3'- uAGUuGCGCCGGaa-GUGC-CUg---CUUUA- -5'
25060 5' -53 NC_005336.1 + 80313 0.66 0.953715
Target:  5'- -cCAGCGCGGCUgugcUCACGcgcuGACGGc-- -3'
miRNA:   3'- uaGUUGCGCCGGa---AGUGC----CUGCUuua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.