miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25061 3' -57.9 NC_005336.1 + 12083 0.65 0.823364
Target:  5'- aGCGaGGCgCGGCAGGAGcuacccauggccauGCUGUGcaGCGCc -3'
miRNA:   3'- -UGCcCCG-GUCGUUCUU--------------UGACGC--CGCG- -5'
25061 3' -57.9 NC_005336.1 + 94948 0.66 0.817362
Target:  5'- cCGGGaCCGGCAGGGgcGGCaguaGCaGCGCg -3'
miRNA:   3'- uGCCCcGGUCGUUCU--UUGa---CGcCGCG- -5'
25061 3' -57.9 NC_005336.1 + 131033 0.66 0.817362
Target:  5'- cCGGaGcGCUgcuGCGGcucGACUGCGGCGCa -3'
miRNA:   3'- uGCC-C-CGGu--CGUUcu-UUGACGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 97260 0.66 0.817362
Target:  5'- uGCGcGGCC-GCAAagguGAcGCUGCGGCccGCa -3'
miRNA:   3'- -UGCcCCGGuCGUU----CUuUGACGCCG--CG- -5'
25061 3' -57.9 NC_005336.1 + 97325 0.66 0.817362
Target:  5'- uGCGGGuGCCuuuuGCAGucucCUGCgacGGCGCg -3'
miRNA:   3'- -UGCCC-CGGu---CGUUcuuuGACG---CCGCG- -5'
25061 3' -57.9 NC_005336.1 + 75134 0.66 0.817362
Target:  5'- aGCGcGGaCCAGCcGGAGucgucCUccaGCGGCGCg -3'
miRNA:   3'- -UGCcCC-GGUCGuUCUUu----GA---CGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 39359 0.66 0.808646
Target:  5'- cCGGucauGGCCGGCGGcaccgcGAGcacgcGCgUGCGGCGCc -3'
miRNA:   3'- uGCC----CCGGUCGUU------CUU-----UG-ACGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 30359 0.66 0.808646
Target:  5'- cGCGcGGaCAcCGAGGAGCUGCuGCGCa -3'
miRNA:   3'- -UGCcCCgGUcGUUCUUUGACGcCGCG- -5'
25061 3' -57.9 NC_005336.1 + 16353 0.66 0.808646
Target:  5'- gGCGGGGUggcgcgucagCAGCAGGAacaucacgAugUGCGcggagacgccGCGCc -3'
miRNA:   3'- -UGCCCCG----------GUCGUUCU--------UugACGC----------CGCG- -5'
25061 3' -57.9 NC_005336.1 + 16639 0.66 0.808646
Target:  5'- cGCGaGGcGCCgcccuccggcGGCAGGAAggcgcaggGCaGCGGCGUg -3'
miRNA:   3'- -UGC-CC-CGG----------UCGUUCUU--------UGaCGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 109593 0.66 0.808646
Target:  5'- cGCGGGuCCGGCGgcacguccacGGcGACcGCGuGCGCg -3'
miRNA:   3'- -UGCCCcGGUCGU----------UCuUUGaCGC-CGCG- -5'
25061 3' -57.9 NC_005336.1 + 84002 0.66 0.808646
Target:  5'- cGCGGGcGCCGGCGcGggGCacgucaCGGCa- -3'
miRNA:   3'- -UGCCC-CGGUCGUuCuuUGac----GCCGcg -5'
25061 3' -57.9 NC_005336.1 + 84235 0.66 0.808646
Target:  5'- cGCGGGGCaguGGCGAuGgcGCUaGgGGCGa -3'
miRNA:   3'- -UGCCCCGg--UCGUU-CuuUGA-CgCCGCg -5'
25061 3' -57.9 NC_005336.1 + 84170 0.66 0.808646
Target:  5'- cGCGGcGaCCGGCGuGGAGCacGCGGCGg -3'
miRNA:   3'- -UGCCcC-GGUCGUuCUUUGa-CGCCGCg -5'
25061 3' -57.9 NC_005336.1 + 9894 0.66 0.799769
Target:  5'- cGCGGGcGCgCGGacuGAAAgUGCuGGUGCa -3'
miRNA:   3'- -UGCCC-CG-GUCguuCUUUgACG-CCGCG- -5'
25061 3' -57.9 NC_005336.1 + 71441 0.66 0.799769
Target:  5'- gUGGuGGCCAGCAAcGAcACgcaccGCcGCGCg -3'
miRNA:   3'- uGCC-CCGGUCGUU-CUuUGa----CGcCGCG- -5'
25061 3' -57.9 NC_005336.1 + 78765 0.66 0.799769
Target:  5'- -aGGGGUCGGCcacgAAGAggUccuugGCGcGCGCc -3'
miRNA:   3'- ugCCCCGGUCG----UUCUuuGa----CGC-CGCG- -5'
25061 3' -57.9 NC_005336.1 + 68472 0.66 0.799769
Target:  5'- cGCGGacgcGGCuCuGCGAGAAcccggccauGCUGCGcGCGUu -3'
miRNA:   3'- -UGCC----CCG-GuCGUUCUU---------UGACGC-CGCG- -5'
25061 3' -57.9 NC_005336.1 + 86192 0.66 0.799769
Target:  5'- cGCGGGaGCUugAGCAcGGc-CUcGCGGCGCc -3'
miRNA:   3'- -UGCCC-CGG--UCGUuCUuuGA-CGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 17309 0.66 0.799769
Target:  5'- uGCGGGcGUCGGCGucgugAGAGAgccCaGCGuGCGCg -3'
miRNA:   3'- -UGCCC-CGGUCGU-----UCUUU---GaCGC-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.