miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25061 3' -57.9 NC_005336.1 + 119850 0.93 0.02024
Target:  5'- gACGGGGCCAGCAAGAAACU--GGCGCg -3'
miRNA:   3'- -UGCCCCGGUCGUUCUUUGAcgCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 60194 0.82 0.123412
Target:  5'- -gGGGGCCGGCGAcGggGCUGgggcUGGCGCu -3'
miRNA:   3'- ugCCCCGGUCGUU-CuuUGAC----GCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 91873 0.8 0.147871
Target:  5'- aGCGuGGCCGGCGAGGgguAGCUGCaGCGCa -3'
miRNA:   3'- -UGCcCCGGUCGUUCU---UUGACGcCGCG- -5'
25061 3' -57.9 NC_005336.1 + 32981 0.79 0.167967
Target:  5'- gUGGGGCCcGCGGGAGGCUcgugccgguccGCGGCGUu -3'
miRNA:   3'- uGCCCCGGuCGUUCUUUGA-----------CGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 94954 0.77 0.249415
Target:  5'- cGCGGGcgcGCCGGC-GGcGACUGCGGCGa -3'
miRNA:   3'- -UGCCC---CGGUCGuUCuUUGACGCCGCg -5'
25061 3' -57.9 NC_005336.1 + 14386 0.77 0.249415
Target:  5'- cGCGGGGCaguggCGGCGcGAGcaccACUGUGGCGCc -3'
miRNA:   3'- -UGCCCCG-----GUCGUuCUU----UGACGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 75256 0.76 0.261629
Target:  5'- gAUGaGGGCCAGCAGGuccucguccACggugGCGGCGCc -3'
miRNA:   3'- -UGC-CCCGGUCGUUCuu-------UGa---CGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 105485 0.76 0.280196
Target:  5'- cGCGGGGCUGGCugcGAcgcgcaccgcaguAGCUGCGcGCGCc -3'
miRNA:   3'- -UGCCCCGGUCGuu-CU-------------UUGACGC-CGCG- -5'
25061 3' -57.9 NC_005336.1 + 3483 0.75 0.297031
Target:  5'- gACGGGGCCcgccuccgcgaaggcGGCcGGcAGCgGCGGCGCc -3'
miRNA:   3'- -UGCCCCGG---------------UCGuUCuUUGaCGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 3483 0.75 0.297031
Target:  5'- gACGGGGCCcgccuccgcgaaggcGGCcGGcAGCgGCGGCGCc -3'
miRNA:   3'- -UGCCCCGG---------------UCGuUCuUUGaCGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 65984 0.75 0.31536
Target:  5'- cGCGGccguGGCCGGCGccguGGAGGCgcugcGCGGCGUg -3'
miRNA:   3'- -UGCC----CCGGUCGU----UCUUUGa----CGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 48733 0.75 0.31536
Target:  5'- cCGGcacGGCC-GCGGGcAACUGCGGCGUg -3'
miRNA:   3'- uGCC---CCGGuCGUUCuUUGACGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 11501 0.75 0.321901
Target:  5'- cGCGGuuaGGCgcucgacCAGCGAGGAcUUGCGGCGCa -3'
miRNA:   3'- -UGCC---CCG-------GUCGUUCUUuGACGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 68376 0.74 0.337555
Target:  5'- cGCGGGcGCCGGCGGccgcGCUguucGCGGCGCu -3'
miRNA:   3'- -UGCCC-CGGUCGUUcuu-UGA----CGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 98781 0.74 0.345202
Target:  5'- cCGGaGCCGGCGAGGcggucGAC-GCGGCGCc -3'
miRNA:   3'- uGCCcCGGUCGUUCU-----UUGaCGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 77658 0.74 0.345202
Target:  5'- cGCGGaagggcacGGCCAGCGAGucGCgccagGCGGCGg -3'
miRNA:   3'- -UGCC--------CCGGUCGUUCuuUGa----CGCCGCg -5'
25061 3' -57.9 NC_005336.1 + 84065 0.74 0.352972
Target:  5'- cGCGGGaGCCGGCGcaggacacgcGGGAAC--CGGCGCg -3'
miRNA:   3'- -UGCCC-CGGUCGU----------UCUUUGacGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 92033 0.74 0.36566
Target:  5'- uUGGGGcCCAGCAgcacGGGGAUgaggugcgaguugGCGGCGCu -3'
miRNA:   3'- uGCCCC-GGUCGU----UCUUUGa------------CGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 52631 0.74 0.368881
Target:  5'- cGCGGacgaGGCCuaccuccGCGAGcugcgcggcGAGCUGCGGCGCu -3'
miRNA:   3'- -UGCC----CCGGu------CGUUC---------UUUGACGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 60849 0.74 0.368881
Target:  5'- uCGGGGCUcucGGCGGGcgucuCUGCGGgCGCg -3'
miRNA:   3'- uGCCCCGG---UCGUUCuuu--GACGCC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.