miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25061 3' -57.9 NC_005336.1 + 3053 0.66 0.781572
Target:  5'- ----cGCCGGCAAGccGAAggGCGGCGCa -3'
miRNA:   3'- ugcccCGGUCGUUC--UUUgaCGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 3053 0.66 0.781572
Target:  5'- ----cGCCGGCAAGccGAAggGCGGCGCa -3'
miRNA:   3'- ugcccCGGUCGUUC--UUUgaCGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 3376 0.68 0.71414
Target:  5'- uGCGGGuacGCCGGCGAGA----GCaGGCGUc -3'
miRNA:   3'- -UGCCC---CGGUCGUUCUuugaCG-CCGCG- -5'
25061 3' -57.9 NC_005336.1 + 3376 0.68 0.71414
Target:  5'- uGCGGGuacGCCGGCGAGA----GCaGGCGUc -3'
miRNA:   3'- -UGCCC---CGGUCGUUCUuugaCG-CCGCG- -5'
25061 3' -57.9 NC_005336.1 + 3483 0.75 0.297031
Target:  5'- gACGGGGCCcgccuccgcgaaggcGGCcGGcAGCgGCGGCGCc -3'
miRNA:   3'- -UGCCCCGG---------------UCGuUCuUUGaCGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 3483 0.75 0.297031
Target:  5'- gACGGGGCCcgccuccgcgaaggcGGCcGGcAGCgGCGGCGCc -3'
miRNA:   3'- -UGCCCCGG---------------UCGuUCuUUGaCGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 3628 0.69 0.633047
Target:  5'- uCGGgucuGGCCGGCGGGAGggaggucugcgcGCcGCGGCGg -3'
miRNA:   3'- uGCC----CCGGUCGUUCUU------------UGaCGCCGCg -5'
25061 3' -57.9 NC_005336.1 + 3628 0.69 0.633047
Target:  5'- uCGGgucuGGCCGGCGGGAGggaggucugcgcGCcGCGGCGg -3'
miRNA:   3'- uGCC----CCGGUCGUUCUU------------UGaCGCCGCg -5'
25061 3' -57.9 NC_005336.1 + 3729 0.72 0.483487
Target:  5'- cCGGGGCgCGGCGggcgcggugagGGAAGC--CGGCGCg -3'
miRNA:   3'- uGCCCCG-GUCGU-----------UCUUUGacGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 3729 0.72 0.483487
Target:  5'- cCGGGGCgCGGCGggcgcggugagGGAAGC--CGGCGCg -3'
miRNA:   3'- uGCCCCG-GUCGU-----------UCUUUGacGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 3923 0.68 0.673867
Target:  5'- cGCGcGuCCAGCGGGccGCcGCGGCGCa -3'
miRNA:   3'- -UGCcCcGGUCGUUCuuUGaCGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 5600 0.67 0.772267
Target:  5'- gGCGGGGuCCGGCGuu-AGCUcCgGGUGCu -3'
miRNA:   3'- -UGCCCC-GGUCGUucuUUGAcG-CCGCG- -5'
25061 3' -57.9 NC_005336.1 + 5705 0.73 0.401288
Target:  5'- cGCGGaGGCCAGCGcGAgcgcgucAGCUGCGuccGCGUg -3'
miRNA:   3'- -UGCC-CCGGUCGUuCU-------UUGACGC---CGCG- -5'
25061 3' -57.9 NC_005336.1 + 5739 0.7 0.541864
Target:  5'- gGC-GGGUCAGCAu--GGC-GCGGCGCa -3'
miRNA:   3'- -UGcCCCGGUCGUucuUUGaCGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 5894 0.68 0.684008
Target:  5'- cGCGGGcGUgGGCucAGGAuAgUGCGGCGg -3'
miRNA:   3'- -UGCCC-CGgUCG--UUCUuUgACGCCGCg -5'
25061 3' -57.9 NC_005336.1 + 5937 0.73 0.409884
Target:  5'- cGCGGcGGCauuuaucCAGCGGGAGaacACgucGCGGCGCa -3'
miRNA:   3'- -UGCC-CCG-------GUCGUUCUU---UGa--CGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 5996 0.67 0.743642
Target:  5'- gAUGGGGUgCGGCGAGGAcacGCgcagccggaaGCGGuCGCa -3'
miRNA:   3'- -UGCCCCG-GUCGUUCUU---UGa---------CGCC-GCG- -5'
25061 3' -57.9 NC_005336.1 + 6237 0.69 0.602395
Target:  5'- cACGGcGGCCGucgcacGCAcGuuGUUGCGGCGCa -3'
miRNA:   3'- -UGCC-CCGGU------CGUuCuuUGACGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 7251 0.68 0.71414
Target:  5'- uGCGGaGCCAcgacggacucccGCGAGAGcaugGCgGCGGCGUu -3'
miRNA:   3'- -UGCCcCGGU------------CGUUCUU----UGaCGCCGCG- -5'
25061 3' -57.9 NC_005336.1 + 7359 0.67 0.743642
Target:  5'- cCGcGGGCguGCGAGGucGCccGcCGGCGCg -3'
miRNA:   3'- uGC-CCCGguCGUUCUu-UGa-C-GCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.