miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25061 5' -55.6 NC_005336.1 + 69365 0.66 0.901864
Target:  5'- -aGCGCCuGgGCG--UGCCGUCUUCc -3'
miRNA:   3'- gaCGCGGuCgCGUgaAUGGUAGGAGu -5'
25061 5' -55.6 NC_005336.1 + 33034 0.66 0.901864
Target:  5'- -cGgGCCcauGCGCGCccagGCCAUCCa-- -3'
miRNA:   3'- gaCgCGGu--CGCGUGaa--UGGUAGGagu -5'
25061 5' -55.6 NC_005336.1 + 118042 0.66 0.901864
Target:  5'- -cGCGCUguGGCGCACggGCCccgcggCCUUc -3'
miRNA:   3'- gaCGCGG--UCGCGUGaaUGGua----GGAGu -5'
25061 5' -55.6 NC_005336.1 + 51317 0.66 0.901864
Target:  5'- -cGCGCCcGCGCGCgu-CgCGUCCa-- -3'
miRNA:   3'- gaCGCGGuCGCGUGaauG-GUAGGagu -5'
25061 5' -55.6 NC_005336.1 + 133204 0.66 0.901216
Target:  5'- -cGCGCCguggacgcauacaGGCGCACgacacugcACCA-CCUCGc -3'
miRNA:   3'- gaCGCGG-------------UCGCGUGaa------UGGUaGGAGU- -5'
25061 5' -55.6 NC_005336.1 + 9185 0.66 0.895277
Target:  5'- -cGCGCgCAGCGCGCgcuCCA-CCa-- -3'
miRNA:   3'- gaCGCG-GUCGCGUGaauGGUaGGagu -5'
25061 5' -55.6 NC_005336.1 + 11729 0.66 0.895277
Target:  5'- gUGCGCUcGCGCGCUcuCCG-CaCUCAg -3'
miRNA:   3'- gACGCGGuCGCGUGAauGGUaG-GAGU- -5'
25061 5' -55.6 NC_005336.1 + 30031 0.66 0.895277
Target:  5'- gUGCGCgAgagcuugagcuGCGCGCagGCCGUCCa-- -3'
miRNA:   3'- gACGCGgU-----------CGCGUGaaUGGUAGGagu -5'
25061 5' -55.6 NC_005336.1 + 40673 0.66 0.895277
Target:  5'- aUGaccaGCCGGUGcCGC-UGCgCGUCCUCGg -3'
miRNA:   3'- gACg---CGGUCGC-GUGaAUG-GUAGGAGU- -5'
25061 5' -55.6 NC_005336.1 + 36382 0.66 0.895277
Target:  5'- uUGCGCCGGCGCAggUcgagcacgaACgCGUCCa-- -3'
miRNA:   3'- gACGCGGUCGCGUgaA---------UG-GUAGGagu -5'
25061 5' -55.6 NC_005336.1 + 81481 0.66 0.888451
Target:  5'- -cGCaGCCcGCGCGCUucgugUACU-UCCUCAa -3'
miRNA:   3'- gaCG-CGGuCGCGUGA-----AUGGuAGGAGU- -5'
25061 5' -55.6 NC_005336.1 + 135908 0.66 0.888451
Target:  5'- gCUGCuGCUGGCGCggcGCgggGCCGcggCCUCGg -3'
miRNA:   3'- -GACG-CGGUCGCG---UGaa-UGGUa--GGAGU- -5'
25061 5' -55.6 NC_005336.1 + 46874 0.66 0.888451
Target:  5'- -cGCGCgCGGCGC-CUUGCCGaacagcaCCUUg -3'
miRNA:   3'- gaCGCG-GUCGCGuGAAUGGUa------GGAGu -5'
25061 5' -55.6 NC_005336.1 + 130904 0.66 0.888451
Target:  5'- gUGCGCgAGCGCGCggcCCGcugCCUg- -3'
miRNA:   3'- gACGCGgUCGCGUGaauGGUa--GGAgu -5'
25061 5' -55.6 NC_005336.1 + 134494 0.66 0.888451
Target:  5'- gCUGCGCC-GCGCGCUgcaaaUACgGUUuagauaCUCAa -3'
miRNA:   3'- -GACGCGGuCGCGUGA-----AUGgUAG------GAGU- -5'
25061 5' -55.6 NC_005336.1 + 124386 0.66 0.888451
Target:  5'- gCUGCGCgAGaugcgGCACaagACCAaCCUCGu -3'
miRNA:   3'- -GACGCGgUCg----CGUGaa-UGGUaGGAGU- -5'
25061 5' -55.6 NC_005336.1 + 135908 0.66 0.888451
Target:  5'- gCUGCuGCUGGCGCggcGCgggGCCGcggCCUCGg -3'
miRNA:   3'- -GACG-CGGUCGCG---UGaa-UGGUa--GGAGU- -5'
25061 5' -55.6 NC_005336.1 + 96780 0.66 0.887755
Target:  5'- aUGCGaggucacCCGGCGCAUgcucGCCG-CCUCGa -3'
miRNA:   3'- gACGC-------GGUCGCGUGaa--UGGUaGGAGU- -5'
25061 5' -55.6 NC_005336.1 + 123836 0.66 0.88139
Target:  5'- -cGUGCCGGCGCucgguGCUcgACCAg-CUCAu -3'
miRNA:   3'- gaCGCGGUCGCG-----UGAa-UGGUagGAGU- -5'
25061 5' -55.6 NC_005336.1 + 118228 0.66 0.88139
Target:  5'- -cGCGUC-GCGCACgggcucGCCGUCCg-- -3'
miRNA:   3'- gaCGCGGuCGCGUGaa----UGGUAGGagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.