miRNA display CGI


Results 1 - 20 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25062 3' -53.8 NC_005336.1 + 22173 0.65 0.969086
Target:  5'- uGGuCGccgccguAGAGC-CCGACuucuUCGAGCCCg -3'
miRNA:   3'- uCCuGC-------UUUUGaGGCUGu---GGCUCGGG- -5'
25062 3' -53.8 NC_005336.1 + 5794 0.65 0.969086
Target:  5'- cAGGAUGGAGGucacgauCUCCGGCGgCaGGGCgCa -3'
miRNA:   3'- -UCCUGCUUUU-------GAGGCUGUgG-CUCGgG- -5'
25062 3' -53.8 NC_005336.1 + 69397 0.65 0.969086
Target:  5'- cAGGAUGAGcuuggugaugagcGACUCCuccGCGCUGaAGCgCCa -3'
miRNA:   3'- -UCCUGCUU-------------UUGAGGc--UGUGGC-UCG-GG- -5'
25062 3' -53.8 NC_005336.1 + 62629 0.66 0.966284
Target:  5'- cGGAUGucgucCUCCGugAUCGcGUCCa -3'
miRNA:   3'- uCCUGCuuuu-GAGGCugUGGCuCGGG- -5'
25062 3' -53.8 NC_005336.1 + 80576 0.66 0.966284
Target:  5'- cGGGCGAGAACacguacUCGugGCCGAaCuCCg -3'
miRNA:   3'- uCCUGCUUUUGa-----GGCugUGGCUcG-GG- -5'
25062 3' -53.8 NC_005336.1 + 63909 0.66 0.966284
Target:  5'- gAGGACGc--GC-CCGACAaguCCGuGCUCu -3'
miRNA:   3'- -UCCUGCuuuUGaGGCUGU---GGCuCGGG- -5'
25062 3' -53.8 NC_005336.1 + 69553 0.66 0.966284
Target:  5'- gAGGAgGAGGACUUCGuCGCgGcGCUg -3'
miRNA:   3'- -UCCUgCUUUUGAGGCuGUGgCuCGGg -5'
25062 3' -53.8 NC_005336.1 + 28382 0.66 0.966284
Target:  5'- gAGGAuCGcAAGCaCCGuGCGCagcaCGAGCCCg -3'
miRNA:   3'- -UCCU-GCuUUUGaGGC-UGUG----GCUCGGG- -5'
25062 3' -53.8 NC_005336.1 + 109326 0.66 0.966284
Target:  5'- aGGGccACGcAGAGCgCgGACACCGcGUCCa -3'
miRNA:   3'- -UCC--UGC-UUUUGaGgCUGUGGCuCGGG- -5'
25062 3' -53.8 NC_005336.1 + 89253 0.66 0.965962
Target:  5'- cGGGCGAAAgggggguucgcccGCUUCGGCGcgucCCGAcagGCCUu -3'
miRNA:   3'- uCCUGCUUU-------------UGAGGCUGU----GGCU---CGGG- -5'
25062 3' -53.8 NC_005336.1 + 99402 0.66 0.965311
Target:  5'- cGGGagaguccuucgcgcGCGAGGACUUCGACGCgGuGCa- -3'
miRNA:   3'- -UCC--------------UGCUUUUGAGGCUGUGgCuCGgg -5'
25062 3' -53.8 NC_005336.1 + 49664 0.66 0.962966
Target:  5'- uGGACGAGgucucgggcAGCUCgGACGacUCGAGCg- -3'
miRNA:   3'- uCCUGCUU---------UUGAGgCUGU--GGCUCGgg -5'
25062 3' -53.8 NC_005336.1 + 60734 0.66 0.962966
Target:  5'- cGGGCGucGugUCCauccagGACACCGAcGUCUu -3'
miRNA:   3'- uCCUGCuuUugAGG------CUGUGGCU-CGGG- -5'
25062 3' -53.8 NC_005336.1 + 50024 0.66 0.962966
Target:  5'- cAGuGugGcGAGCgCCGACacACCGgaaAGCCCa -3'
miRNA:   3'- -UC-CugCuUUUGaGGCUG--UGGC---UCGGG- -5'
25062 3' -53.8 NC_005336.1 + 36279 0.66 0.962966
Target:  5'- cGGGCGGAugagCCGGC-CCGcGCCg -3'
miRNA:   3'- uCCUGCUUuugaGGCUGuGGCuCGGg -5'
25062 3' -53.8 NC_005336.1 + 48165 0.66 0.962966
Target:  5'- uGGACGccAugUacgacauccCCGACGCCGcGGCCa -3'
miRNA:   3'- uCCUGCuuUugA---------GGCUGUGGC-UCGGg -5'
25062 3' -53.8 NC_005336.1 + 39598 0.66 0.962966
Target:  5'- gAGGAguacguCGAcgGCUUCGGCAUC-AGCCUc -3'
miRNA:   3'- -UCCU------GCUuuUGAGGCUGUGGcUCGGG- -5'
25062 3' -53.8 NC_005336.1 + 63302 0.66 0.962966
Target:  5'- -cGACGAugauGCgcuucgcgcCCGAgGCCGuGCCCg -3'
miRNA:   3'- ucCUGCUuu--UGa--------GGCUgUGGCuCGGG- -5'
25062 3' -53.8 NC_005336.1 + 29721 0.66 0.962966
Target:  5'- gAGGACGu--GCUCgaGCGCCGcgcgGGCCUc -3'
miRNA:   3'- -UCCUGCuuuUGAGgcUGUGGC----UCGGG- -5'
25062 3' -53.8 NC_005336.1 + 22311 0.66 0.962966
Target:  5'- uGGACcccGACgucgCCGcCGCCGAGCgCg -3'
miRNA:   3'- uCCUGcuuUUGa---GGCuGUGGCUCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.