miRNA display CGI


Results 1 - 20 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25062 3' -53.8 NC_005336.1 + 22173 0.65 0.969086
Target:  5'- uGGuCGccgccguAGAGC-CCGACuucuUCGAGCCCg -3'
miRNA:   3'- uCCuGC-------UUUUGaGGCUGu---GGCUCGGG- -5'
25062 3' -53.8 NC_005336.1 + 5794 0.65 0.969086
Target:  5'- cAGGAUGGAGGucacgauCUCCGGCGgCaGGGCgCa -3'
miRNA:   3'- -UCCUGCUUUU-------GAGGCUGUgG-CUCGgG- -5'
25062 3' -53.8 NC_005336.1 + 69397 0.65 0.969086
Target:  5'- cAGGAUGAGcuuggugaugagcGACUCCuccGCGCUGaAGCgCCa -3'
miRNA:   3'- -UCCUGCUU-------------UUGAGGc--UGUGGC-UCG-GG- -5'
25062 3' -53.8 NC_005336.1 + 80576 0.66 0.966284
Target:  5'- cGGGCGAGAACacguacUCGugGCCGAaCuCCg -3'
miRNA:   3'- uCCUGCUUUUGa-----GGCugUGGCUcG-GG- -5'
25062 3' -53.8 NC_005336.1 + 39598 0.66 0.962966
Target:  5'- gAGGAguacguCGAcgGCUUCGGCAUC-AGCCUc -3'
miRNA:   3'- -UCCU------GCUuuUGAGGCUGUGGcUCGGG- -5'
25062 3' -53.8 NC_005336.1 + 10387 0.66 0.959427
Target:  5'- gGGGGCGGGcuguCUUcgaaggCGGCGCgGAGCUCg -3'
miRNA:   3'- -UCCUGCUUuu--GAG------GCUGUGgCUCGGG- -5'
25062 3' -53.8 NC_005336.1 + 93374 0.66 0.959427
Target:  5'- gAGGuuGGAGGCg-CGGCGCCGcGCgCCg -3'
miRNA:   3'- -UCCugCUUUUGagGCUGUGGCuCG-GG- -5'
25062 3' -53.8 NC_005336.1 + 132539 0.66 0.955662
Target:  5'- -aGACGccgacAACUCCGACGaCGAGCUa -3'
miRNA:   3'- ucCUGCuu---UUGAGGCUGUgGCUCGGg -5'
25062 3' -53.8 NC_005336.1 + 99402 0.66 0.965311
Target:  5'- cGGGagaguccuucgcgcGCGAGGACUUCGACGCgGuGCa- -3'
miRNA:   3'- -UCC--------------UGCUUUUGAGGCUGUGgCuCGgg -5'
25062 3' -53.8 NC_005336.1 + 69553 0.66 0.966284
Target:  5'- gAGGAgGAGGACUUCGuCGCgGcGCUg -3'
miRNA:   3'- -UCCUgCUUUUGAGGCuGUGgCuCGGg -5'
25062 3' -53.8 NC_005336.1 + 119682 0.66 0.957195
Target:  5'- gAGGagcugcugaGCGAcuacgacccgcucauGAGCcaggCCGGCgagccGCCGAGCCCg -3'
miRNA:   3'- -UCC---------UGCU---------------UUUGa---GGCUG-----UGGCUCGGG- -5'
25062 3' -53.8 NC_005336.1 + 66571 0.66 0.951667
Target:  5'- cGGugGggGACguaUUCGACGa-GAGCCg -3'
miRNA:   3'- uCCugCuuUUG---AGGCUGUggCUCGGg -5'
25062 3' -53.8 NC_005336.1 + 28382 0.66 0.966284
Target:  5'- gAGGAuCGcAAGCaCCGuGCGCagcaCGAGCCCg -3'
miRNA:   3'- -UCCU-GCuUUUGaGGC-UGUG----GCUCGGG- -5'
25062 3' -53.8 NC_005336.1 + 52397 0.66 0.959427
Target:  5'- cGGACaGAugAAGCUgCUGGuCugCGAGCUCg -3'
miRNA:   3'- uCCUG-CU--UUUGA-GGCU-GugGCUCGGG- -5'
25062 3' -53.8 NC_005336.1 + 22311 0.66 0.962966
Target:  5'- uGGACcccGACgucgCCGcCGCCGAGCgCg -3'
miRNA:   3'- uCCUGcuuUUGa---GGCuGUGGCUCGgG- -5'
25062 3' -53.8 NC_005336.1 + 73264 0.66 0.962622
Target:  5'- cGGACGcguACUCCGcgcgcccGCACCcGcAGCUCg -3'
miRNA:   3'- uCCUGCuuuUGAGGC-------UGUGG-C-UCGGG- -5'
25062 3' -53.8 NC_005336.1 + 62629 0.66 0.966284
Target:  5'- cGGAUGucgucCUCCGugAUCGcGUCCa -3'
miRNA:   3'- uCCUGCuuuu-GAGGCugUGGCuCGGG- -5'
25062 3' -53.8 NC_005336.1 + 50024 0.66 0.962966
Target:  5'- cAGuGugGcGAGCgCCGACacACCGgaaAGCCCa -3'
miRNA:   3'- -UC-CugCuUUUGaGGCUG--UGGC---UCGGG- -5'
25062 3' -53.8 NC_005336.1 + 122850 0.66 0.955662
Target:  5'- cGGugGAGAG-UUCGaugacGCGCCGcGCCCc -3'
miRNA:   3'- uCCugCUUUUgAGGC-----UGUGGCuCGGG- -5'
25062 3' -53.8 NC_005336.1 + 109326 0.66 0.966284
Target:  5'- aGGGccACGcAGAGCgCgGACACCGcGUCCa -3'
miRNA:   3'- -UCC--UGC-UUUUGaGgCUGUGGCuCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.