miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25062 5' -55.1 NC_005336.1 + 51680 0.66 0.927392
Target:  5'- cGAgGGCcGGGUGCcg-GCGCUCg--- -3'
miRNA:   3'- aCU-CCGaCCCACGcuaUGCGAGaagc -5'
25062 5' -55.1 NC_005336.1 + 60019 0.66 0.926853
Target:  5'- aGAGGUUGaGGUggugugccGCGcgGCGCUgcaucucCUUCGg -3'
miRNA:   3'- aCUCCGAC-CCA--------CGCuaUGCGA-------GAAGC- -5'
25062 5' -55.1 NC_005336.1 + 47038 0.66 0.921895
Target:  5'- gGAGGCgGuGGUGCGGcGCGCgccgUCc -3'
miRNA:   3'- aCUCCGaC-CCACGCUaUGCGaga-AGc -5'
25062 5' -55.1 NC_005336.1 + 50244 0.66 0.916152
Target:  5'- -cGGGCUcGGGagGCGAgcUGCGCUCgaccCGg -3'
miRNA:   3'- acUCCGA-CCCa-CGCU--AUGCGAGaa--GC- -5'
25062 5' -55.1 NC_005336.1 + 67897 0.66 0.910165
Target:  5'- -cAGGCUGGGcGCGAgcgccaccAgGCUUUUCa -3'
miRNA:   3'- acUCCGACCCaCGCUa-------UgCGAGAAGc -5'
25062 5' -55.1 NC_005336.1 + 120235 0.66 0.903934
Target:  5'- cGcGGC-GGcGcUGCGGcGCGCUCUUCGc -3'
miRNA:   3'- aCuCCGaCC-C-ACGCUaUGCGAGAAGC- -5'
25062 5' -55.1 NC_005336.1 + 99211 0.66 0.897464
Target:  5'- gGAGGUgcguaGGGccUGCGAgGCGCUCgaCGc -3'
miRNA:   3'- aCUCCGa----CCC--ACGCUaUGCGAGaaGC- -5'
25062 5' -55.1 NC_005336.1 + 134017 0.67 0.890755
Target:  5'- cGuGcGCgUGGGUGCGGUGCGCggccgcCUgCGg -3'
miRNA:   3'- aCuC-CG-ACCCACGCUAUGCGa-----GAaGC- -5'
25062 5' -55.1 NC_005336.1 + 105487 0.68 0.8538
Target:  5'- cGGGGCUGGcUGCGAcGCGCa----- -3'
miRNA:   3'- aCUCCGACCcACGCUaUGCGagaagc -5'
25062 5' -55.1 NC_005336.1 + 99763 0.69 0.793635
Target:  5'- gGAGGCgcUGcGGcUGCuGGUGCGCcgCUUCGg -3'
miRNA:   3'- aCUCCG--AC-CC-ACG-CUAUGCGa-GAAGC- -5'
25062 5' -55.1 NC_005336.1 + 13758 0.7 0.755772
Target:  5'- cGAGGUUGacgccGGUGUag-ACGCUCUUCa -3'
miRNA:   3'- aCUCCGAC-----CCACGcuaUGCGAGAAGc -5'
25062 5' -55.1 NC_005336.1 + 106286 0.7 0.736129
Target:  5'- gGAGcuGCUGuGUGCGAUGCGCcggcgCUUCa -3'
miRNA:   3'- aCUC--CGACcCACGCUAUGCGa----GAAGc -5'
25062 5' -55.1 NC_005336.1 + 77965 0.7 0.726163
Target:  5'- -cGGGCUGGGgcgagGgGGUGCGCUUcgagUCGc -3'
miRNA:   3'- acUCCGACCCa----CgCUAUGCGAGa---AGC- -5'
25062 5' -55.1 NC_005336.1 + 25911 0.73 0.551418
Target:  5'- gGAGGUUGGGUaGUuGUGgGUUCUUCGg -3'
miRNA:   3'- aCUCCGACCCA-CGcUAUgCGAGAAGC- -5'
25062 5' -55.1 NC_005336.1 + 5291 0.75 0.463051
Target:  5'- uUGAacuGCUGGGUGCGAUAUGCg-UUCGc -3'
miRNA:   3'- -ACUc--CGACCCACGCUAUGCGagAAGC- -5'
25062 5' -55.1 NC_005336.1 + 119630 1.1 0.002754
Target:  5'- cUGAGGCUGGGUGCGAUACGCUCUUCGg -3'
miRNA:   3'- -ACUCCGACCCACGCUAUGCGAGAAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.