miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25063 3' -50.7 NC_005336.1 + 17032 0.66 0.993681
Target:  5'- aCGGGcGCGcGuucgucuGCACCAUGUCGAUGu -3'
miRNA:   3'- gGUCU-CGUuCu------UGUGGUACGGCUACu -5'
25063 3' -50.7 NC_005336.1 + 75607 0.66 0.993681
Target:  5'- gUAGAGCAGcAGCAUCucgAUGCCGGUc- -3'
miRNA:   3'- gGUCUCGUUcUUGUGG---UACGGCUAcu -5'
25063 3' -50.7 NC_005336.1 + 122588 0.66 0.993681
Target:  5'- gCGGuGCugccgccgcccGAGGAgGCCGcGCCGAUGGc -3'
miRNA:   3'- gGUCuCG-----------UUCUUgUGGUaCGGCUACU- -5'
25063 3' -50.7 NC_005336.1 + 108097 0.66 0.993681
Target:  5'- --cGAGCugcAGAGCGCCuucGCCGA-GAa -3'
miRNA:   3'- gguCUCGu--UCUUGUGGua-CGGCUaCU- -5'
25063 3' -50.7 NC_005336.1 + 85396 0.66 0.992695
Target:  5'- cCCAGGcGCGGGuccuuCACCGUGCCc---- -3'
miRNA:   3'- -GGUCU-CGUUCuu---GUGGUACGGcuacu -5'
25063 3' -50.7 NC_005336.1 + 79363 0.66 0.992695
Target:  5'- gCCGG-GCGcGGACacagguuuuugACCAUguaGCCGAUGAa -3'
miRNA:   3'- -GGUCuCGUuCUUG-----------UGGUA---CGGCUACU- -5'
25063 3' -50.7 NC_005336.1 + 56892 0.66 0.991591
Target:  5'- uCCGuGAGCcAGAcGCACCc-GCUGGUGAu -3'
miRNA:   3'- -GGU-CUCGuUCU-UGUGGuaCGGCUACU- -5'
25063 3' -50.7 NC_005336.1 + 88404 0.66 0.991591
Target:  5'- gCGGGucGCGAGGcaGCGCCAUguuccaGCCGGUGc -3'
miRNA:   3'- gGUCU--CGUUCU--UGUGGUA------CGGCUACu -5'
25063 3' -50.7 NC_005336.1 + 77173 0.66 0.991591
Target:  5'- aCCGGGcGCGAGAGCGcgugguaggcgcCCAgcaGCCGcgGGu -3'
miRNA:   3'- -GGUCU-CGUUCUUGU------------GGUa--CGGCuaCU- -5'
25063 3' -50.7 NC_005336.1 + 82679 0.66 0.991591
Target:  5'- gCCGGcAGCuuuacgccGAacaGCGCCAUGgCGAUGGg -3'
miRNA:   3'- -GGUC-UCGuu------CU---UGUGGUACgGCUACU- -5'
25063 3' -50.7 NC_005336.1 + 78489 0.66 0.991591
Target:  5'- aCAuGAGCGGGuuguGCGCCuccauGUGCgCGGUGGu -3'
miRNA:   3'- gGU-CUCGUUCu---UGUGG-----UACG-GCUACU- -5'
25063 3' -50.7 NC_005336.1 + 114038 0.66 0.991591
Target:  5'- aCCGcGAGgcCAAGGGCAUCAUcCCGAUGc -3'
miRNA:   3'- -GGU-CUC--GUUCUUGUGGUAcGGCUACu -5'
25063 3' -50.7 NC_005336.1 + 45722 0.66 0.991591
Target:  5'- gCAcGGGCGAG-GCACCGcGCCGcaccAUGAa -3'
miRNA:   3'- gGU-CUCGUUCuUGUGGUaCGGC----UACU- -5'
25063 3' -50.7 NC_005336.1 + 65626 0.66 0.990359
Target:  5'- aCAGAGCu-GcGCGCCGUGgCGAa-- -3'
miRNA:   3'- gGUCUCGuuCuUGUGGUACgGCUacu -5'
25063 3' -50.7 NC_005336.1 + 49747 0.66 0.990359
Target:  5'- aCAGccgcgucuucGGCGAGAGCACCAccagGCUGGa-- -3'
miRNA:   3'- gGUC----------UCGUUCUUGUGGUa---CGGCUacu -5'
25063 3' -50.7 NC_005336.1 + 95324 0.66 0.990359
Target:  5'- --cGAGCAcacgaucgGGAACACCAUGCUa---- -3'
miRNA:   3'- gguCUCGU--------UCUUGUGGUACGGcuacu -5'
25063 3' -50.7 NC_005336.1 + 74972 0.66 0.990359
Target:  5'- cCCgAGGGCGGucugcGAGCGCCAggucgGCCucGGUGAc -3'
miRNA:   3'- -GG-UCUCGUU-----CUUGUGGUa----CGG--CUACU- -5'
25063 3' -50.7 NC_005336.1 + 92079 0.66 0.98899
Target:  5'- --cGAGCAGGAAguUgAUGCCGAa-- -3'
miRNA:   3'- gguCUCGUUCUUguGgUACGGCUacu -5'
25063 3' -50.7 NC_005336.1 + 26962 0.67 0.987474
Target:  5'- gCAGAcCGGGAucucGCGCCGUGCCGc--- -3'
miRNA:   3'- gGUCUcGUUCU----UGUGGUACGGCuacu -5'
25063 3' -50.7 NC_005336.1 + 13644 0.67 0.987474
Target:  5'- gCAGcAGCGGGAGCAgCA-GCCGuccgGAc -3'
miRNA:   3'- gGUC-UCGUUCUUGUgGUaCGGCua--CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.