miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25063 3' -50.7 NC_005336.1 + 119214 1.12 0.005829
Target:  5'- gCCAGAGCAAGAACACCAUGCCGAUGAu -3'
miRNA:   3'- -GGUCUCGUUCUUGUGGUACGGCUACU- -5'
25063 3' -50.7 NC_005336.1 + 123874 0.78 0.577621
Target:  5'- aCCGGAGCAcGAGCACCcUGCCcAUGc -3'
miRNA:   3'- -GGUCUCGUuCUUGUGGuACGGcUACu -5'
25063 3' -50.7 NC_005336.1 + 86064 0.77 0.620149
Target:  5'- --cGAGCAcGGGCACCAUGCUGAcGAg -3'
miRNA:   3'- gguCUCGUuCUUGUGGUACGGCUaCU- -5'
25063 3' -50.7 NC_005336.1 + 118481 0.76 0.684045
Target:  5'- aCGGGGCAaccGGAGCAUCcgGCCGgcGAu -3'
miRNA:   3'- gGUCUCGU---UCUUGUGGuaCGGCuaCU- -5'
25063 3' -50.7 NC_005336.1 + 133319 0.73 0.822697
Target:  5'- aCGcGAGUggGAACACCAUGCUGcacuacAUGGc -3'
miRNA:   3'- gGU-CUCGuuCUUGUGGUACGGC------UACU- -5'
25063 3' -50.7 NC_005336.1 + 20617 0.72 0.864683
Target:  5'- -aAGGGCGAGccGACGagaguCCAUGCUGGUGAg -3'
miRNA:   3'- ggUCUCGUUC--UUGU-----GGUACGGCUACU- -5'
25063 3' -50.7 NC_005336.1 + 121378 0.72 0.872424
Target:  5'- gUCGGAGgGAGAaaugcggcuGCGCUcgGUCGAUGAc -3'
miRNA:   3'- -GGUCUCgUUCU---------UGUGGuaCGGCUACU- -5'
25063 3' -50.7 NC_005336.1 + 80902 0.72 0.872424
Target:  5'- gCCAGAGCAcGAACAgCGagGCCGcgagcGUGAg -3'
miRNA:   3'- -GGUCUCGUuCUUGUgGUa-CGGC-----UACU- -5'
25063 3' -50.7 NC_005336.1 + 59414 0.71 0.900329
Target:  5'- gCAGcAGCAcGAGCACCAgcagguaUGCCagGAUGAa -3'
miRNA:   3'- gGUC-UCGUuCUUGUGGU-------ACGG--CUACU- -5'
25063 3' -50.7 NC_005336.1 + 65010 0.7 0.919783
Target:  5'- cUCGGGGCGcaGGAACACCA-GCCccuUGAc -3'
miRNA:   3'- -GGUCUCGU--UCUUGUGGUaCGGcu-ACU- -5'
25063 3' -50.7 NC_005336.1 + 105147 0.7 0.925528
Target:  5'- aCguGAGCAAGGucuuCACCAcGCaGAUGAa -3'
miRNA:   3'- -GguCUCGUUCUu---GUGGUaCGgCUACU- -5'
25063 3' -50.7 NC_005336.1 + 94811 0.7 0.925528
Target:  5'- -gAGAGCGAGGGCGCCGggaacUGCCa---- -3'
miRNA:   3'- ggUCUCGUUCUUGUGGU-----ACGGcuacu -5'
25063 3' -50.7 NC_005336.1 + 75845 0.7 0.925528
Target:  5'- uCCAGAGCAGGAaggcggccaucuGCGCCucggccucgcUGCCGGa-- -3'
miRNA:   3'- -GGUCUCGUUCU------------UGUGGu---------ACGGCUacu -5'
25063 3' -50.7 NC_005336.1 + 77791 0.7 0.934698
Target:  5'- gCGGAGUggGGccgcgccuucguggACGCCAUGgCCGcgGAc -3'
miRNA:   3'- gGUCUCGuuCU--------------UGUGGUAC-GGCuaCU- -5'
25063 3' -50.7 NC_005336.1 + 34539 0.7 0.936238
Target:  5'- gCCcGAGCGguAGAACACCAccggcGCCagGAUGAg -3'
miRNA:   3'- -GGuCUCGU--UCUUGUGGUa----CGG--CUACU- -5'
25063 3' -50.7 NC_005336.1 + 78983 0.69 0.945913
Target:  5'- gCGGAGUuccAGGACAUCAUGUCGGa-- -3'
miRNA:   3'- gGUCUCGu--UCUUGUGGUACGGCUacu -5'
25063 3' -50.7 NC_005336.1 + 47328 0.69 0.945913
Target:  5'- gCCGGAGau-GAACAUCGUGcCCGAg-- -3'
miRNA:   3'- -GGUCUCguuCUUGUGGUAC-GGCUacu -5'
25063 3' -50.7 NC_005336.1 + 33160 0.69 0.945913
Target:  5'- cCCGGAGCc-GAGCuCCAUGCgcgugcucugcaCGGUGAg -3'
miRNA:   3'- -GGUCUCGuuCUUGuGGUACG------------GCUACU- -5'
25063 3' -50.7 NC_005336.1 + 77035 0.69 0.945913
Target:  5'- uCCAGGGaguccauccuCGcGAGCAUCGUGCCGAaGAu -3'
miRNA:   3'- -GGUCUC----------GUuCUUGUGGUACGGCUaCU- -5'
25063 3' -50.7 NC_005336.1 + 101412 0.69 0.950366
Target:  5'- gCCAGcGGCAcGGGCGCCAgcggcgccgcguUGCCGAg-- -3'
miRNA:   3'- -GGUC-UCGUuCUUGUGGU------------ACGGCUacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.