miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25063 5' -59.1 NC_005336.1 + 28128 0.66 0.783653
Target:  5'- uCUCcGCGaGCGAaaGCCGCCCgcGGUCg -3'
miRNA:   3'- cGAGcCGCcUGCU--CGGCGGGaaCUAG- -5'
25063 5' -59.1 NC_005336.1 + 67821 0.66 0.783653
Target:  5'- uGCacgCGcGCGGGCGcGCCGCgg-UGGUCg -3'
miRNA:   3'- -CGa--GC-CGCCUGCuCGGCGggaACUAG- -5'
25063 5' -59.1 NC_005336.1 + 130118 0.66 0.780931
Target:  5'- --gCGGCGGcguccaacccgcgcGCGuGCCGCCggcUGAUCg -3'
miRNA:   3'- cgaGCCGCC--------------UGCuCGGCGGga-ACUAG- -5'
25063 5' -59.1 NC_005336.1 + 136018 0.66 0.774534
Target:  5'- cGCU-GGCGGccGCGGGCCGCgCggcggGGUa -3'
miRNA:   3'- -CGAgCCGCC--UGCUCGGCGgGaa---CUAg -5'
25063 5' -59.1 NC_005336.1 + 29853 0.66 0.774534
Target:  5'- aCUC-GCaGACGAGCCGCgCgcaGGUCg -3'
miRNA:   3'- cGAGcCGcCUGCUCGGCGgGaa-CUAG- -5'
25063 5' -59.1 NC_005336.1 + 136018 0.66 0.774534
Target:  5'- cGCU-GGCGGccGCGGGCCGCgCggcggGGUa -3'
miRNA:   3'- -CGAgCCGCC--UGCUCGGCGgGaa---CUAg -5'
25063 5' -59.1 NC_005336.1 + 76319 0.66 0.773615
Target:  5'- --cCGuGCGcGCGGGCCGCuggcgcccguccuCCUUGGUCa -3'
miRNA:   3'- cgaGC-CGCcUGCUCGGCG-------------GGAACUAG- -5'
25063 5' -59.1 NC_005336.1 + 124658 0.66 0.771773
Target:  5'- cGUgggCGGCGGcgugcugcacccgcGCGAGCCGUCCg----- -3'
miRNA:   3'- -CGa--GCCGCC--------------UGCUCGGCGGGaacuag -5'
25063 5' -59.1 NC_005336.1 + 61215 0.66 0.765291
Target:  5'- aCUCGGUGaccucGACGcuGgCGUCCUUGGUCu -3'
miRNA:   3'- cGAGCCGC-----CUGCu-CgGCGGGAACUAG- -5'
25063 5' -59.1 NC_005336.1 + 21258 0.66 0.765291
Target:  5'- cGCUCGGCGGAgGcGGUCGCg---GGUUg -3'
miRNA:   3'- -CGAGCCGCCUgC-UCGGCGggaaCUAG- -5'
25063 5' -59.1 NC_005336.1 + 77750 0.66 0.755935
Target:  5'- gGCUCgcuGGCGaccauGACGGcGCUGUCCUUGAg- -3'
miRNA:   3'- -CGAG---CCGC-----CUGCU-CGGCGGGAACUag -5'
25063 5' -59.1 NC_005336.1 + 65063 0.66 0.755935
Target:  5'- cCUCGGUGGAcCGAGgCGCUCccGAg- -3'
miRNA:   3'- cGAGCCGCCU-GCUCgGCGGGaaCUag -5'
25063 5' -59.1 NC_005336.1 + 40443 0.66 0.755935
Target:  5'- cCUCGGCGG-CGAGCCgGUgCUgcagccgGAUg -3'
miRNA:   3'- cGAGCCGCCuGCUCGG-CGgGAa------CUAg -5'
25063 5' -59.1 NC_005336.1 + 50246 0.66 0.755935
Target:  5'- gGCUCGG-GaGGCGAGCUGCgCUcGAc- -3'
miRNA:   3'- -CGAGCCgC-CUGCUCGGCGgGAaCUag -5'
25063 5' -59.1 NC_005336.1 + 41579 0.66 0.755935
Target:  5'- cGCUC-GCGGACGaAGCCcaGCCCg----- -3'
miRNA:   3'- -CGAGcCGCCUGC-UCGG--CGGGaacuag -5'
25063 5' -59.1 NC_005336.1 + 46870 0.66 0.755935
Target:  5'- cGCUCGcGCGcGGCGccuuGCCGaacagcaCCUUGGUa -3'
miRNA:   3'- -CGAGC-CGC-CUGCu---CGGCg------GGAACUAg -5'
25063 5' -59.1 NC_005336.1 + 109398 0.66 0.746472
Target:  5'- aGCUCcGCGGcGCGcAGCCGCgcgaaggccgCCUUGAg- -3'
miRNA:   3'- -CGAGcCGCC-UGC-UCGGCG----------GGAACUag -5'
25063 5' -59.1 NC_005336.1 + 3473 0.66 0.746472
Target:  5'- cGUUCGcGCGGACGGGgcCCGCCUc----- -3'
miRNA:   3'- -CGAGC-CGCCUGCUC--GGCGGGaacuag -5'
25063 5' -59.1 NC_005336.1 + 14176 0.66 0.746472
Target:  5'- --aCGcGCGGccaGAGCCGCaCCUUGcUCa -3'
miRNA:   3'- cgaGC-CGCCug-CUCGGCG-GGAACuAG- -5'
25063 5' -59.1 NC_005336.1 + 101129 0.66 0.746472
Target:  5'- cGUgCGcGCGGAccCGAGCaaGCCCUgGAUCa -3'
miRNA:   3'- -CGaGC-CGCCU--GCUCGg-CGGGAaCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.