miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25064 3' -52.2 NC_005336.1 + 120214 0.66 0.98456
Target:  5'- aGG-ACCUGCUCgaagagcucUCGCGG-CGGcGcUGCg -3'
miRNA:   3'- -CCaUGGACGAGa--------AGCGCCaGUU-C-ACG- -5'
25064 3' -52.2 NC_005336.1 + 86321 0.66 0.98456
Target:  5'- cGG-ACCaGgUCUUCaugaaGCGGUCGGGcGCg -3'
miRNA:   3'- -CCaUGGaCgAGAAG-----CGCCAGUUCaCG- -5'
25064 3' -52.2 NC_005336.1 + 96987 0.66 0.98456
Target:  5'- cGUGCUgcccguggGcCUCUUCGCGGaccugCGcGUGCg -3'
miRNA:   3'- cCAUGGa-------C-GAGAAGCGCCa----GUuCACG- -5'
25064 3' -52.2 NC_005336.1 + 82661 0.66 0.98456
Target:  5'- cGGcGCC-GCUCUUCuCGGU--GGUGUg -3'
miRNA:   3'- -CCaUGGaCGAGAAGcGCCAguUCACG- -5'
25064 3' -52.2 NC_005336.1 + 90204 0.66 0.982636
Target:  5'- uGG-ACUUGCUCUcgaagcaguUCGCGGaCAuguuccgcGUGCa -3'
miRNA:   3'- -CCaUGGACGAGA---------AGCGCCaGUu-------CACG- -5'
25064 3' -52.2 NC_005336.1 + 114550 0.66 0.982636
Target:  5'- --cACgUGCUCUUCGCGaacuUCAAG-GUg -3'
miRNA:   3'- ccaUGgACGAGAAGCGCc---AGUUCaCG- -5'
25064 3' -52.2 NC_005336.1 + 94229 0.66 0.982636
Target:  5'- aGG-ACCUGCUCgagCGCGcgcgcaaggaGUCccgcggcgAGGUGCu -3'
miRNA:   3'- -CCaUGGACGAGaa-GCGC----------CAG--------UUCACG- -5'
25064 3' -52.2 NC_005336.1 + 82363 0.66 0.980536
Target:  5'- --aAUCUGCUCcUCGuCGGUCAugauGgagGCg -3'
miRNA:   3'- ccaUGGACGAGaAGC-GCCAGUu---Ca--CG- -5'
25064 3' -52.2 NC_005336.1 + 103540 0.66 0.975776
Target:  5'- --cGCCcGCUgcUCGUGGUCGAGaacgGCg -3'
miRNA:   3'- ccaUGGaCGAgaAGCGCCAGUUCa---CG- -5'
25064 3' -52.2 NC_005336.1 + 16708 0.66 0.975776
Target:  5'- uGUACCUGCgcacgUCcUCGaCGGUCAcGUcuGCg -3'
miRNA:   3'- cCAUGGACG-----AGaAGC-GCCAGUuCA--CG- -5'
25064 3' -52.2 NC_005336.1 + 37219 0.66 0.975776
Target:  5'- cGGU-CUUcgcGCUCUccacgagCGCGGUggcCAGGUGCg -3'
miRNA:   3'- -CCAuGGA---CGAGAa------GCGCCA---GUUCACG- -5'
25064 3' -52.2 NC_005336.1 + 103370 0.67 0.9731
Target:  5'- cGGUGCUgaagGCgc-UCGCGGUCGcGaGCg -3'
miRNA:   3'- -CCAUGGa---CGagaAGCGCCAGUuCaCG- -5'
25064 3' -52.2 NC_005336.1 + 75789 0.67 0.9731
Target:  5'- cGGUGCC-GCUC-UCGCGcUCGuAGcGCg -3'
miRNA:   3'- -CCAUGGaCGAGaAGCGCcAGU-UCaCG- -5'
25064 3' -52.2 NC_005336.1 + 92309 0.67 0.9731
Target:  5'- cGUACCUGaUUCgcugCGCGG-CGAGcaUGCc -3'
miRNA:   3'- cCAUGGAC-GAGaa--GCGCCaGUUC--ACG- -5'
25064 3' -52.2 NC_005336.1 + 66459 0.67 0.970217
Target:  5'- gGGUACCUGCUgCggccgCGCcuGGcCAaaacggAGUGCu -3'
miRNA:   3'- -CCAUGGACGA-Gaa---GCG--CCaGU------UCACG- -5'
25064 3' -52.2 NC_005336.1 + 84806 0.67 0.970217
Target:  5'- uGGaugACCUGCUCcUCGgCGuUCAGGaGCa -3'
miRNA:   3'- -CCa--UGGACGAGaAGC-GCcAGUUCaCG- -5'
25064 3' -52.2 NC_005336.1 + 15731 0.67 0.967118
Target:  5'- cGGUcGCCgggGCUCUUCGCuGagCGAGcGCc -3'
miRNA:   3'- -CCA-UGGa--CGAGAAGCGcCa-GUUCaCG- -5'
25064 3' -52.2 NC_005336.1 + 97745 0.67 0.967118
Target:  5'- cGGUugaguuCgUGCUCUUCGCGGcCuuccuAGcgGCg -3'
miRNA:   3'- -CCAu-----GgACGAGAAGCGCCaGu----UCa-CG- -5'
25064 3' -52.2 NC_005336.1 + 110766 0.67 0.965154
Target:  5'- --aGCCUGCUC-UCGagccgccgcugccgcCGGgcugCGGGUGCg -3'
miRNA:   3'- ccaUGGACGAGaAGC---------------GCCa---GUUCACG- -5'
25064 3' -52.2 NC_005336.1 + 70967 0.67 0.963799
Target:  5'- --cACCUGCggcgCGCGGUCuucUGCa -3'
miRNA:   3'- ccaUGGACGagaaGCGCCAGuucACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.