miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25064 5' -53.9 NC_005336.1 + 18700 0.66 0.963706
Target:  5'- cGGUGUCgaggaaguccACGACGUCGGGGAaGUu -3'
miRNA:   3'- cCCACGGaa--------UGCUGUAGCUCCUcCAc -5'
25064 5' -53.9 NC_005336.1 + 138767 0.66 0.956473
Target:  5'- cGGGccGCCgcccGCGACcgCGGGGAGcGg- -3'
miRNA:   3'- -CCCa-CGGaa--UGCUGuaGCUCCUC-Cac -5'
25064 5' -53.9 NC_005336.1 + 22700 0.66 0.956473
Target:  5'- aGGGUGUaCUgcUugGAgGUUGAGuGGGUGg -3'
miRNA:   3'- -CCCACG-GA--AugCUgUAGCUCcUCCAC- -5'
25064 5' -53.9 NC_005336.1 + 37441 0.66 0.956473
Target:  5'- -cGUGCaCggGCGAgAUCGAGGAGa-- -3'
miRNA:   3'- ccCACG-GaaUGCUgUAGCUCCUCcac -5'
25064 5' -53.9 NC_005336.1 + 138767 0.66 0.956473
Target:  5'- cGGGccGCCgcccGCGACcgCGGGGAGcGg- -3'
miRNA:   3'- -CCCa-CGGaa--UGCUGuaGCUCCUC-Cac -5'
25064 5' -53.9 NC_005336.1 + 91618 0.66 0.956473
Target:  5'- -cGUGCUUggccGCGGCGUCGGGGAuGUc -3'
miRNA:   3'- ccCACGGAa---UGCUGUAGCUCCUcCAc -5'
25064 5' -53.9 NC_005336.1 + 134399 0.66 0.948317
Target:  5'- ---aGCCggcACGGCAUCGcGGAGGg- -3'
miRNA:   3'- cccaCGGaa-UGCUGUAGCuCCUCCac -5'
25064 5' -53.9 NC_005336.1 + 32658 0.68 0.905391
Target:  5'- uGGUGCa-UACGAgGUCGGgcgcggugaggucGGGGGUGa -3'
miRNA:   3'- cCCACGgaAUGCUgUAGCU-------------CCUCCAC- -5'
25064 5' -53.9 NC_005336.1 + 49184 0.68 0.893015
Target:  5'- uGGGcaagGUCUgcUGCaGCAagGAGGAGGUGg -3'
miRNA:   3'- -CCCa---CGGA--AUGcUGUagCUCCUCCAC- -5'
25064 5' -53.9 NC_005336.1 + 39212 0.69 0.864232
Target:  5'- aGGUGCCcucCGugGccgcggugcUCGAGGAGGUc -3'
miRNA:   3'- cCCACGGaauGCugU---------AGCUCCUCCAc -5'
25064 5' -53.9 NC_005336.1 + 113984 0.69 0.854121
Target:  5'- cGGUGCCUUGCGagccGCGcucgccggagcucgUCGccGAGGUGg -3'
miRNA:   3'- cCCACGGAAUGC----UGU--------------AGCucCUCCAC- -5'
25064 5' -53.9 NC_005336.1 + 124770 0.69 0.848532
Target:  5'- aGGUGCCc-GCgGACGUCGAGGGGc-- -3'
miRNA:   3'- cCCACGGaaUG-CUGUAGCUCCUCcac -5'
25064 5' -53.9 NC_005336.1 + 19651 0.69 0.846106
Target:  5'- aGGGUGCUcgGCGACcacgcgCGcguacagccgccgcGGGAGGUGc -3'
miRNA:   3'- -CCCACGGaaUGCUGua----GC--------------UCCUCCAC- -5'
25064 5' -53.9 NC_005336.1 + 115646 0.72 0.699523
Target:  5'- uGG-GCCagACGAaccUCGAGGAGGUGc -3'
miRNA:   3'- cCCaCGGaaUGCUgu-AGCUCCUCCAC- -5'
25064 5' -53.9 NC_005336.1 + 74598 0.74 0.575734
Target:  5'- -cGUGCUgcGCGAgGUCGAGGAGGa- -3'
miRNA:   3'- ccCACGGaaUGCUgUAGCUCCUCCac -5'
25064 5' -53.9 NC_005336.1 + 119120 1.1 0.003718
Target:  5'- cGGGUGCCUUACGACAUCGAGGAGGUGc -3'
miRNA:   3'- -CCCACGGAAUGCUGUAGCUCCUCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.