miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25065 3' -66.8 NC_005336.1 + 101800 0.66 0.454982
Target:  5'- cGCGCgCCGUcGCuCCuCGGGGaGGCGGAa -3'
miRNA:   3'- -CGCG-GGCGcCG-GGcGCCUUcCCGCCU- -5'
25065 3' -66.8 NC_005336.1 + 100588 0.66 0.454982
Target:  5'- -aGCaCCGCGGCCa-CGGA-GGGCa-- -3'
miRNA:   3'- cgCG-GGCGCCGGgcGCCUuCCCGccu -5'
25065 3' -66.8 NC_005336.1 + 130391 0.66 0.454982
Target:  5'- cGCGCUcugcaCGCGGCCUucguaGCGGAGugcuuaGCGGAg -3'
miRNA:   3'- -CGCGG-----GCGCCGGG-----CGCCUUcc----CGCCU- -5'
25065 3' -66.8 NC_005336.1 + 70621 0.66 0.454982
Target:  5'- cUGCCCGuCGcGCgCCGCG---GGGUGGAa -3'
miRNA:   3'- cGCGGGC-GC-CG-GGCGCcuuCCCGCCU- -5'
25065 3' -66.8 NC_005336.1 + 99612 0.66 0.452417
Target:  5'- cCGCgCGCGGCgaccgggugcuaugCCGCGGcguGGGGCa-- -3'
miRNA:   3'- cGCGgGCGCCG--------------GGCGCCu--UCCCGccu -5'
25065 3' -66.8 NC_005336.1 + 122853 0.66 0.44986
Target:  5'- cGUGCCCuaccugaagaacuacGUGGUgCUGCaGGAcgaggAGGGCGGAc -3'
miRNA:   3'- -CGCGGG---------------CGCCG-GGCG-CCU-----UCCCGCCU- -5'
25065 3' -66.8 NC_005336.1 + 88433 0.66 0.446463
Target:  5'- cGCGgCCuCGGCgCCgGCGGAGGGcaCGGGc -3'
miRNA:   3'- -CGCgGGcGCCG-GG-CGCCUUCCc-GCCU- -5'
25065 3' -66.8 NC_005336.1 + 74663 0.66 0.446463
Target:  5'- gGCGCagcgugGCGGCCaggGUGGAcAGcGGCGGGu -3'
miRNA:   3'- -CGCGgg----CGCCGGg--CGCCU-UC-CCGCCU- -5'
25065 3' -66.8 NC_005336.1 + 86266 0.66 0.446463
Target:  5'- aGCGCCgGCGcGCgCGCGGAGuccGGCu-- -3'
miRNA:   3'- -CGCGGgCGC-CGgGCGCCUUc--CCGccu -5'
25065 3' -66.8 NC_005336.1 + 5931 0.66 0.446463
Target:  5'- gGCGUCCGCGGCggcauuuauCCaGCGGGAGaacacgucGCGGc -3'
miRNA:   3'- -CGCGGGCGCCG---------GG-CGCCUUCc-------CGCCu -5'
25065 3' -66.8 NC_005336.1 + 19563 0.66 0.446463
Target:  5'- aCGCaUCGUGGUgCGUGGggGuGGgGGGa -3'
miRNA:   3'- cGCG-GGCGCCGgGCGCCuuC-CCgCCU- -5'
25065 3' -66.8 NC_005336.1 + 14347 0.66 0.443925
Target:  5'- aCGCUCaggcaggaguagcaGCGGUCCGCGacGAGGuGCGGGa -3'
miRNA:   3'- cGCGGG--------------CGCCGGGCGCc-UUCC-CGCCU- -5'
25065 3' -66.8 NC_005336.1 + 6969 0.66 0.438872
Target:  5'- cCGCCUGUGGCCaUGUGGAcaugucgucguugguGGGCGa- -3'
miRNA:   3'- cGCGGGCGCCGG-GCGCCUu--------------CCCGCcu -5'
25065 3' -66.8 NC_005336.1 + 125650 0.66 0.438033
Target:  5'- cGUGCCCcCGGaggagCCGCGGAuGGaCGGGc -3'
miRNA:   3'- -CGCGGGcGCCg----GGCGCCUuCCcGCCU- -5'
25065 3' -66.8 NC_005336.1 + 84 0.66 0.435522
Target:  5'- cGCGaCuCCGCGGaagaggacuccgacUCCGCGGAGGcGGCa-- -3'
miRNA:   3'- -CGC-G-GGCGCC--------------GGGCGCCUUC-CCGccu -5'
25065 3' -66.8 NC_005336.1 + 84 0.66 0.435522
Target:  5'- cGCGaCuCCGCGGaagaggacuccgacUCCGCGGAGGcGGCa-- -3'
miRNA:   3'- -CGC-G-GGCGCC--------------GGGCGCCUUC-CCGccu -5'
25065 3' -66.8 NC_005336.1 + 10143 0.66 0.43302
Target:  5'- gGCGCUCGCGGCggugugcacgUCGUGcGAgagcaccucggugucGGGGCGcGAg -3'
miRNA:   3'- -CGCGGGCGCCG----------GGCGC-CU---------------UCCCGC-CU- -5'
25065 3' -66.8 NC_005336.1 + 98625 0.66 0.429695
Target:  5'- cGCGCgCCGCaGCgCGCG-AAGcGcGCGGAg -3'
miRNA:   3'- -CGCG-GGCGcCGgGCGCcUUC-C-CGCCU- -5'
25065 3' -66.8 NC_005336.1 + 116598 0.66 0.429695
Target:  5'- cGCGCUCG-GGCagcgCCGC-GAAGcGGUGGAa -3'
miRNA:   3'- -CGCGGGCgCCG----GGCGcCUUC-CCGCCU- -5'
25065 3' -66.8 NC_005336.1 + 65906 0.66 0.429695
Target:  5'- -gGCCgUGCGGCCCGUGGgcGaGCGc- -3'
miRNA:   3'- cgCGG-GCGCCGGGCGCCuuCcCGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.